Locus 3769

Sequence ID 3R_DroMel_CAF1
Location 10,228,507 – 10,228,597
Length 90
Max. P 0.748460
window6035

overview

Window 5

Location 10,228,507 – 10,228,597
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 94.73
Mean single sequence MFE -21.42
Consensus MFE -19.58
Energy contribution -19.72
Covariance contribution 0.14
Combinations/Pair 1.12
Mean z-score -1.18
Structure conservation index 0.91
SVM decision value 0.47
SVM RNA-class probability 0.748460
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10228507 90 - 27905053
-UAUGGCGGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU
-....((.(((...(((((....((((.((((...((((((-.((....)-).))))))...)))))))).)))))..))).))......... ( -23.70)
>DroSec_CAF1 86396 90 - 1
-UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU
-..((((.((.......))...(((((.((((...((((((-.((....)-).))))))...)))))))))))))(((...)))......... ( -21.70)
>DroSim_CAF1 86213 90 - 1
-UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU
-..((((.((.......))...(((((.((((...((((((-.((....)-).))))))...)))))))))))))(((...)))......... ( -21.70)
>DroEre_CAF1 87899 90 - 1
-UAUGGCAGCAUAAUUGGCAUAUGAAAUCGCUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU
-....((.(((...(((((....(((((.......((((((-.((....)-).))))))......))))).)))))..))).))......... ( -20.52)
>DroYak_CAF1 92313 90 - 1
-UAUGGCAGCAUAAUUGGCAUAUGAAAUCGCUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU
-....((.(((...(((((....(((((.......((((((-.((....)-).))))))......))))).)))))..))).))......... ( -20.52)
>DroAna_CAF1 79251 92 - 1
AUAUGGCAGCAUAAUUGGCAUAUGA-ACCGUUUAGCGGCAAAAUUAUUGAAAAUUGCUGAAUAAUGUUUCGGCUGGCCGGCAGCAAUUGAAUU
(((((.(((.....))).)))))((-(.((((...((((((............))))))...)))).))).((((.....))))......... ( -20.40)
>consensus
_UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA_AUUAAUGA_AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU
.....((.(((...(((((....((((.((((...((((((............))))))...)))))))).)))))..))).))......... (-19.58 = -19.72 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:32 2006