Locus 3768

Sequence ID 3R_DroMel_CAF1
Location 10,226,924 – 10,227,020
Length 96
Max. P 0.960688
window6034

overview

Window 4

Location 10,226,924 – 10,227,020
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.87
Mean single sequence MFE -21.91
Consensus MFE -18.50
Energy contribution -19.10
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.84
SVM decision value 1.52
SVM RNA-class probability 0.960688
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10226924 96 - 27905053
CUACCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUAUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAAC
((((((((......))))(((((((((..(....)..))).((((((((........)))))..)))..))))))........))))......... ( -19.10)
>DroSec_CAF1 84886 95 - 1
CAGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAA-
..((((((......))))))..(((((..(....)..)))))....(((((((((((....)))...))))))))........((......))..- ( -21.80)
>DroSim_CAF1 84702 95 - 1
CUGCCAACGUAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAGCACGAGUGGAAAAACAA-
.(((((((......))))))).(((((..(....)..)))))....(((((((((((....)))...))))))))........((......))..- ( -22.40)
>DroEre_CAF1 86324 91 - 1
CUGCCAACGCAG-AGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACU---UGCAAAAUUGCAAACACGAGUGGAAAAACAG-
.(((((((....-.))))))).(((((..(....)..))))).............((((((---((..............)))))))).......- ( -21.34)
>DroYak_CAF1 90680 95 - 1
CUGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUGCAUAAUUGCAAAGACGAGUGGGAAAACAG-
.(((((((......))))))).((((((........((((((..(((((........))))).))))))..))))))......((......))..- ( -24.90)
>consensus
CUGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAA_
..((((((......))))))..(((((..(....)..)))))....(((((((((...........)))))))))........((......))... (-18.50 = -19.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:31 2006