Locus 3767

Sequence ID 3R_DroMel_CAF1
Location 10,222,082 – 10,222,190
Length 108
Max. P 0.926322
window6033

overview

Window 3

Location 10,222,082 – 10,222,190
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 93.21
Mean single sequence MFE -31.67
Consensus MFE -27.23
Energy contribution -27.72
Covariance contribution 0.50
Combinations/Pair 1.14
Mean z-score -2.18
Structure conservation index 0.86
SVM decision value 1.18
SVM RNA-class probability 0.926322
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10222082 108 - 27905053
GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCAUAUCCAUGAGACGCGUCGCGACAUGUGUAAACGUCUGGGUAUA
(((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((...((((..((((.....))).)..))))))))))). ( -33.50)
>DroSec_CAF1 80158 108 - 1
GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGUUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA
(((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). ( -30.40)
>DroSim_CAF1 79959 108 - 1
GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA
(((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). ( -33.70)
>DroYak_CAF1 85849 105 - 1
GCAGAUGCAAAUGUAUCUGUAUCUU--UCAGUAU-UGCAAUGUUGCAGUAUCUUUGCUUUAUUCGUAUCCGUGUGACGCGUCGCGACAUGUGUAAACGUCUGGGUAUA
((((((((....))))))))....(--((((..(-(((((((((((((((....)))).....((..((.....))..))..))))))).)))))....))))).... ( -29.10)
>consensus
GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA
(((((((((.(((((........))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). (-27.23 = -27.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:30 2006