Locus 3765

Sequence ID 3R_DroMel_CAF1
Location 10,206,796 – 10,206,916
Length 120
Max. P 0.919447
window6030

overview

Window 0

Location 10,206,796 – 10,206,916
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.61
Mean single sequence MFE -42.88
Consensus MFE -19.32
Energy contribution -21.13
Covariance contribution 1.81
Combinations/Pair 1.34
Mean z-score -2.15
Structure conservation index 0.45
SVM decision value 1.13
SVM RNA-class probability 0.919447
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10206796 120 - 27905053
UCGCGAGGAUCAGCGAGGCGAGUACUUUGCAAAUUACCUCGUCGAGAAUAUGACCAGUCAGAACUACCCGAAUGGUAUGGGUCUGCCACAGCAUUGGGGUCAGUUCUGAUUCGCCAUAGU
((((((((....((((((......))))))......))))).)))...((((.(.((((((((((((((.((((.(.(((.....))).).)))).)))).)))))))))).).)))).. ( -47.60)
>DroPse_CAF1 72340 112 - 1
UCCGCCGGAGAAGCGCUGCGAGUACUAUGUCAAAUACAUGGACGAACACAUGAACAGUCAGAAUUAUCCGAAUGGUAUGGGCCUGCCCCAUCGCUGGGGCCAGUUCUGACUG--------
..(((((......))..))).((.((((((.....))))))))...........(((((((((((........(((....))).((((((....)))))).)))))))))))-------- ( -36.00)
>DroEre_CAF1 65405 120 - 1
UCGGGAGGAUCAGCGAGGCGAGUACUUUGCAAAUUACCUGGUCGAGAACAUGACCAGUCAGAACUAUCCGAAUGGUGUGGGUCUGCCACAGCAUUGGGGUGAGUUCUGAUUCGCCAUAGU
(((.(.....)..)))(((((((..............(((((((......))))))).(((((((((((.((((.(((((.....))))).)))).)))).))))))))))))))..... ( -49.30)
>DroWil_CAF1 75024 119 - 1
CCAACCGGAGAUGCGUCGCGAUUAUUUUGCCAACUAUUUGUACGAGAACAUGAAUAGCAAAAACUAUCCAAAUGGUGAGGGCUUGCCUCAUCAUUGGGGACAAUUUUGAC-CACCAUGCA
......((...((.((((.((((.((((((....((((..(........)..))))))))))....(((.((((((((((.....))))))))))..))).)))).))))-))))..... ( -29.40)
>DroAna_CAF1 58131 120 - 1
CCGGGAGGAGCAGCGCGGCGAGUUCUUCGCCGAGUACCUCUUCGAAAACAUGACCAGUGAGAACUAUCCCAACGGUGUUGGCCUGCCGCAUCACUGGGGUGAGUUCUGAUUGAGCAUGGG
((..((((((..((.(((((((...))))))).))..)))))).....((((..((((.((((((((((((..(((((.((....)))))))..)))))).)))))).))))..)))))) ( -53.70)
>DroPer_CAF1 73171 120 - 1
UCCGCCGGAGAAGCGCUGCGAGUACUAUGUCAAAUAUAUGGACGAACACAUGAACAGUCAGAACUAUCCGAAUGGUGUGGGCCUGCCCCAUCGCUGGGGCCAGUUCUGACUGCACAGGAU
(((..((.((.....)).)).((.((((((.....)))))))).......((..(((((((((((.(((.(.(((((.(((....)))))))).).)))..)))))))))))..))))). ( -41.30)
>consensus
UCGGCAGGAGAAGCGCGGCGAGUACUUUGCCAAAUACCUGGACGAAAACAUGAACAGUCAGAACUAUCCGAAUGGUGUGGGCCUGCCACAUCACUGGGGUCAGUUCUGACUCACCAUGGU
.................((((.....))))..................((((...((((((((((.(((...((((((((.....))))))))..)))...))))))))))...)))).. (-19.32 = -21.13 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:27 2006