Locus 3764

Sequence ID 3R_DroMel_CAF1
Location 10,206,638 – 10,206,750
Length 112
Max. P 0.855791
window6029

overview

Window 9

Location 10,206,638 – 10,206,750
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -18.82
Consensus MFE -11.35
Energy contribution -12.36
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.60
SVM decision value 0.81
SVM RNA-class probability 0.855791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10206638 112 - 27905053
GAUCGAGCAAGCUCAUUGGGAUCCCAUACUACACAUACAUGUACACGUCCAUA--UAU-CCAACCAGCCGAUAUGCAUCCCAU-----UAGUUAUCUUUCCUCUAAAAACUUGCUCAAAA
....(((((((.....((((((.......((((......))))........((--(((-(.........)))))).))))))(-----(((...........))))...))))))).... ( -21.00)
>DroSec_CAF1 64801 112 - 1
GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA--UUU-CCAACCACCCGAUAUGCAUCCAAU-----UAGUUAUCUUUCCUCUAAAAACUUGCUCAAAA
....((((((((..((((((.........((((......))))...((.....--...-...))..))))))..))......(-----(((...........))))....)))))).... ( -17.60)
>DroSim_CAF1 64535 112 - 1
GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA--UCU-CCAACCACCCGAUAUGCAUCCAAC-----UAGUUAUCUUUCCUCCAAAAACUUGCUCAAAA
....(((((((....(((((.........((((......))))......((((--((.-..........))))))........-----.............)))))...))))))).... ( -19.40)
>DroYak_CAF1 69709 114 - 1
GAUCGAGCCAGCUCGUUGGGAUCCCAUCUUACACG---AUGUACACUUACAUAUGUCUGCCAA-CACUUGAUAUGCAUCCUUACACCACCAUUAUCUUUCCUCCCAGACCACU-UCCAC-
...((((....))))((((((...((((......)---)))..........((((((......-.....))))))..........................))))))......-.....- ( -17.30)
>consensus
GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA__UCU_CCAACCACCCGAUAUGCAUCCAAU_____UAGUUAUCUUUCCUCCAAAAACUUGCUCAAAA
....(((((((......((((........((((......))))..........................((((...................))))..)))).......))))))).... (-11.35 = -12.36 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:26 2006