Locus 3761

Sequence ID 3R_DroMel_CAF1
Location 10,204,863 – 10,204,954
Length 91
Max. P 0.536998
window6024

overview

Window 4

Location 10,204,863 – 10,204,954
Length 91
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.86
Mean single sequence MFE -23.09
Consensus MFE -13.98
Energy contribution -14.40
Covariance contribution 0.42
Combinations/Pair 1.15
Mean z-score -2.15
Structure conservation index 0.61
SVM decision value 0.01
SVM RNA-class probability 0.536998
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10204863 91 + 27905053
ACAGCAGAAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC
.((((((.....))))))...(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -17.80)
>DroSec_CAF1 63060 91 + 1
GCAAGAGCAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC
((..((((......(((((.(((((.------...((((...---------)))))))))..)))))......((....))....)))).((.-.....)).))... ( -22.30)
>DroEre_CAF1 63561 91 + 1
ACAGCAGCAACAUUGUUGCAUGCGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC
...((((((....))))))..(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -24.00)
>DroYak_CAF1 67993 91 + 1
ACAGCAGCAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC
...((((((....))))))..(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -22.10)
>DroAna_CAF1 56692 95 + 1
---GCAGCAGCAUUGUUGCAUGUGGCCACUGCCAUUUGCAACU--------GCAAUCACAGAGUGACCAGAAAGCAAAUGCGAGAGCUCAGCC-UAAAAGCAGCCGC
---...((.((...((((((.(((((....))))).))))))(--------((..((((...)))).......((....((....))...)).-.....))))).)) ( -28.40)
>DroPer_CAF1 71623 97 + 1
-------ACACAUUGUUGCAUGUGGCAAAUGCCAUUUGCAACAGCACAGCAGCAAUCACAGUCC---AAAAAACCAAAUGCAAAAGCUUAGCCCCAAAAGCAGCCAC
-------......(((((((.(((((....))))).)))))))((...(((.............---...........)))....((((........)))).))... ( -23.96)
>consensus
ACAGCAGCAACAUUGUUGCAUGUGGC______CAUUUGCAAC_________GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC_UAAAAGCAGCCGC
......(((((...)))))..(((((......(((((((..................................))))))).....(((..........))).))))) (-13.98 = -14.40 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:21 2006