Locus 3760

Sequence ID 3R_DroMel_CAF1
Location 10,203,541 – 10,203,633
Length 92
Max. P 0.662254
window6023

overview

Window 3

Location 10,203,541 – 10,203,633
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.05
Mean single sequence MFE -22.10
Consensus MFE -15.33
Energy contribution -15.33
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.69
SVM decision value 0.27
SVM RNA-class probability 0.662254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10203541 92 + 27905053
UGGGCAGCAAAAGCAGACGCAGAA------------GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
...((((........(((((....------------))....((....))....)))(((((.(((((((((..(.....)..))))))))).))))))))).. ( -23.30)
>DroSec_CAF1 61770 94 + 1
UGGGCAGCAAAAGCAGAGGCAGAAG----------AGCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
...((.((....))....)).....----------.((((((((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -22.40)
>DroSim_CAF1 61821 86 + 1
UGGGCAGCAAAAGCAGAA------------------GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
......((....))....------------------((((((((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -21.40)
>DroEre_CAF1 62185 104 + 1
UGGACAGCAAAGGCAGAAGCAGAAGCAGAAGCAGAAGCUGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
......((....((....))....))....((((((((((......)))).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -27.10)
>DroYak_CAF1 66662 80 + 1
UGGACAGC------------------------AGAAUCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
......((------------------------((((......((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -20.00)
>DroPer_CAF1 70143 77 + 1
CGCCCAGCAGCAGC---------------------------AGCAGCAGCUAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
.........((((.---------------------------(((....)))......(((((.(((((((((..(.....)..))))))))).))))))))).. ( -18.40)
>consensus
UGGGCAGCAAAAGCAGA___________________GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC
.............................................((((........(((((.(((((((((..(.....)..))))))))).))))))))).. (-15.33 = -15.33 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:20 2006