| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,190,203 – 10,190,331 |
| Length | 128 |
| Max. P | 0.970165 |
| Location | 10,190,203 – 10,190,297 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -15.59 |
| Energy contribution | -16.77 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10190203 94 - 27905053 GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAAUAACCCAAUCCACAAUCCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA (((((..(.....)..)))))..((((......))))..........(((((....((((....)))).......)))))...........----... ( -23.90) >DroSec_CAF1 48540 93 - 1 GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCAAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA (((((..(.....)..)))))..((((......))))..-.........................((((((......))))))........----... ( -22.90) >DroSim_CAF1 48562 93 - 1 UCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCCAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA ...(((((((...))))...)))((((......))))..-....((((..(.....((((....))))....)..))))............----... ( -21.80) >DroEre_CAF1 48953 78 - 1 GCUGGAGCUCAAAGAGCCGGUCC----CCCAUACCCC----------------AUCCCAUGCCCCUGCUCCCGAGUUGGACUUACAACUAAGCAGACA (((((.((((...)))).((...----.)).......----------------...))).))..(((((....(((((......))))).)))))... ( -20.40) >consensus GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA_ACCCCAAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA____ACA (((((..(.....)..)))))..((((......))))............................((((((......))))))............... (-15.59 = -16.77 + 1.19)
| Location | 10,190,239 – 10,190,331 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 70.41 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.970165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10190239 92 - 27905053 UUCUUCUGCGCCAAUCGAAAGAGCUGGCCAGGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAAUAACCCAAUCCACAAUCCC ....((((.((((.((....))..)))))))).((((((..(.....)..)))))).((((......))))..................... ( -32.70) >DroSec_CAF1 48576 76 - 1 UUCUUCUG---------------CUGGCAAAGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCAAUUCCCAAACCC .......(---------------((.....)))((((((..(.....)..)))))).((((......))))..-.................. ( -21.60) >DroSim_CAF1 48598 76 - 1 UUCUUCUG---------------CUGGCAAAGCGUCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCCAUUCCCAAACCC .......(---------------(((((..(((.......)))......))))))..((((......))))..-.................. ( -18.60) >DroYak_CAF1 48835 76 - 1 UUCUUCGCCGCCAGAUGAAAGAGCCGGCG-AGCGGCUGGAGCUCAAAGAGCCAGUUUGGGAUCCAUUCCCCA---------------AUCCC .....(((((((.............))))-.)))(((((..(.....)..)))))(((((........))))---------------).... ( -23.72) >consensus UUCUUCUG_______________CUGGCAAAGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA_ACCCCAAUUCCCAAACCC .........................((......((((((..(.....)..)))))).((((......))))..................)). (-15.59 = -15.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:19 2006