| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,185,241 – 10,185,361 |
| Length | 120 |
| Max. P | 0.702605 |
| Location | 10,185,241 – 10,185,361 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -19.17 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10185241 120 + 27905053 CCGAAGUGUUGAGAAGUUUGACCAUUUUUUCGAUCAGCGUUUGACCGAAAUUAACAUCUUCGUCUCCGACAUUUUCGAGUGAACUUGAAAGUGCCAUUACUUUAAUGGCACAUACAUAUA .((((((((((((((((......)))))((((.((((...)))).)))).)))))).)))))..........(((((((....)))))))(((((((((...)))))))))......... ( -32.80) >DroSec_CAF1 43497 120 + 1 CCGAAGUGUUGAGAAGUUUGACCAUUUUUUCAAUCAGCAUUUGACCCAAAUUAACAUCUUCGUUUCCGCCAUUUUCGAGGGAACUCGAAAGUGCCAUUACUUUAAUGGCACAUACAUAUA .((((((((((((((((......))))).((((.......))))......)))))).)))))..........(((((((....)))))))(((((((((...)))))))))......... ( -32.20) >DroSim_CAF1 43221 120 + 1 CCGAAGUGUUGAGUAGUUUGACCAAUUUUUCGAUCAGCAUUUGACCGAAAUUAACAUCUUCGUUUCCGCCAUUUUCGAGGGAACUCGAAAGUGCCAUUACUUUAAUGGCACAUACAUAUA .(((((((((((((......)).....(((((.((((...)))).))))))))))).)))))..........(((((((....)))))))(((((((((...)))))))))......... ( -35.70) >DroEre_CAF1 44111 120 + 1 CCGAAGAGUUGAGAAGUGUCACAAGUCUUUCGAUCAGCAUUUGGCCGAAAUUGACAUCUUCGUUUCCAUUGCUUUCGAGAGAGUUCGAAAGUGCCAUUACUUUUAUGCCAGUUACAUAUA ...............((((.((...((((((((..((((..(((.((((.........))))...))).)))).))))))))((..(((((((....)))))))..))..)).))))... ( -26.90) >DroYak_CAF1 43776 120 + 1 GCGAAGAGUUGAGAAGUGUCACAAGCUUUUCGAUCAGCAUUUGGCCGAAAUUGACAUCUUCGUUGCUGCUACUUUCGAGGGAAUUGGAAAGUGCCAUUACUUUAAUGCCAGUUACAUAGA ..(((((((((((((((.......)))))))..((.((.....)).))....))).)))))((.((((.(((((((.((....)).))))))).(((((...))))).)))).))..... ( -27.30) >DroMoj_CAF1 49120 120 + 1 GCGAAGUCUCCUGCAGCUGGACAAGGCGCUUCAAGAUCAUUUGACCGCGCUGCACAUCUUCGGUGUCCUCGUUGUGCAGGGCAUAGGACAAGGCCAUUACCUUCAUGGCGGUCACAUAGA ..((((.(.(((...........))).))))).........(((((((.(((((((....(((.....))).))))))).))..........(((((.......))))))))))...... ( -37.70) >consensus CCGAAGUGUUGAGAAGUUUGACAAGUUUUUCGAUCAGCAUUUGACCGAAAUUAACAUCUUCGUUUCCGCCAUUUUCGAGGGAACUCGAAAGUGCCAUUACUUUAAUGGCACAUACAUAUA .(((((((((((...(.....).....(((((.(((.....))).))))))))))).)))))........(((((((((....)))))))))((((((.....))))))........... (-19.17 = -20.02 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:16 2006