Locus 3756

Sequence ID 3R_DroMel_CAF1
Location 10,179,989 – 10,180,079
Length 90
Max. P 0.742851
window6018

overview

Window 8

Location 10,179,989 – 10,180,079
Length 90
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 95.68
Mean single sequence MFE -20.34
Consensus MFE -16.63
Energy contribution -16.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.82
SVM decision value 0.45
SVM RNA-class probability 0.742851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10179989 90 + 27905053
GCCA---CUUGGUACUCUGCACCCAGAACCGAGAUCGCCCGGCUCCCAAAAAUAAACACUCGCCCGGCAUCAUCAUCAUAAUAAUAAUGAUAC
....---((((((..((((....))))))))))...(((.(((..................))).)))......(((((.......))))).. ( -20.87)
>DroSec_CAF1 38348 92 + 1
GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC-CGGCAUCAUCAUCAUAAUAAUAAUGAUAC
(((....((((((..((((....)))))))))).......(((..................))-))))......(((((.......))))).. ( -20.07)
>DroSim_CAF1 38023 92 + 1
GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC-CGGCAUCAUCAUCAUAAUAAUAAUGAUAC
(((....((((((..((((....)))))))))).......(((..................))-))))......(((((.......))))).. ( -20.07)
>consensus
GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC_CGGCAUCAUCAUCAUAAUAAUAAUGAUAC
(((....((((((..((((....)))))))))).......((...))..................)))......(((((.......))))).. (-16.63 = -16.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:15 2006