Locus 3755

Sequence ID 3R_DroMel_CAF1
Location 10,179,288 – 10,179,398
Length 110
Max. P 0.532568
window6017

overview

Window 7

Location 10,179,288 – 10,179,398
Length 110
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -22.38
Consensus MFE -13.92
Energy contribution -14.37
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.62
SVM decision value -0.00
SVM RNA-class probability 0.532568
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10179288 110 - 27905053
GCCC--------CCCUUUCACUAUCGGCUUUCUCCAGCGUCGCUUGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUUCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA
....--------..............((((((...(((((.....)))))(((((..((((((((....))).)))))......(((((.....)))))..)))))..)))))).... ( -21.40)
>DroPse_CAF1 40328 95 - 1
UCCU---------CUGGCCGCUAUCGG--------------ACACGCGCAACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGCACGGAAGUAUAA
...(---------(((.(((....)))--------------....(((((..((((.((((((((....))).)))))..))))(((((.....)))))..))))).))))....... ( -23.90)
>DroEre_CAF1 38242 114 - 1
CAGCC----CGCCCCUUUCACUAUCGGCUUUCUCCAGUGUCGCUUGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA
..((.----(((......((((...((......))))))......)))....((((.((((((((....))).)))))..))))..................))((((....)))).. ( -22.50)
>DroWil_CAF1 44119 109 - 1
AUU-GCUGCCGCCCCCUUCACAG--------CGCCAGCAUUCCGCGCUCCACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA
..(-((((.(((..........)--------)).)))))((((((((.....((((.((((((((....))).)))))..))))(((((.....)))))...)))..)))))...... ( -28.30)
>DroAna_CAF1 33469 104 - 1
-------------CACCUCACUAUCAGCUUUCUCCAGUGUCACUCG-GCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA
-------------.............((........(((((....)-)).))((((.((((((((....))).)))))..))))..................))((((....)))).. ( -19.60)
>DroPer_CAF1 40744 95 - 1
UCCU---------CUGGCCGCUAUCGG--------------ACACGCUCAACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGCACGGAAGUAUAA
...(---------(((..(((...((.--------------...))......((((.((((((((....))).)))))..))))..................)))..))))....... ( -18.60)
>consensus
UCC__________CCCUUCACUAUCGG____CUCCAG_GUCACUCGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA
.............................................((((...((((.((((((((....))).)))))..))))(((((.....)))))...))))((....)).... (-13.92 = -14.37 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:14 2006