Locus 3754

Sequence ID 3R_DroMel_CAF1
Location 10,178,724 – 10,178,821
Length 97
Max. P 0.579638
window6016

overview

Window 6

Location 10,178,724 – 10,178,821
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 84.88
Mean single sequence MFE -16.92
Consensus MFE -13.44
Energy contribution -13.38
Covariance contribution -0.06
Combinations/Pair 1.20
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.579638
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10178724 97 + 27905053
AAAUAUUCUAUACACAUUUUUGUCAUAUUUUCUAAUUGAAAUUGACGUGGAAAUCGAGUGGAAAAUAAAAACCUACCAAGAGUAUGUAAAGUAUAUC
..((((.((.((((.((((((((((...((((.....)))).)))).........(.((((...........))))))))))).)))).)).)))). ( -15.30)
>DroSec_CAF1 37048 97 + 1
AAAUAUUCUAUACACAUUUAUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC
.........((((((.(((((((((...((((.....)))).)))))))))..((..((((...........))))...)).........)))))). ( -20.50)
>DroSim_CAF1 36272 97 + 1
AAAUAUUCUAUACACAUUUUUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC
.........((((((.((..(((((...((((.....)))).)))))..))..((..((((...........))))...)).........)))))). ( -16.90)
>DroYak_CAF1 37243 81 + 1
AAAUAUUCUACACACAUUUGUGUCACAUCUCCUAAUUGGAAUUGACGUGAAAAUCGAGUGGAAAAUGAAAACUUACCAAUA----------------
.....((((((.(((....)))((((.(((((.....)))...)).)))).......))))))..................---------------- ( -15.00)
>consensus
AAAUAUUCUAUACACAUUUUUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC
.....((((((.(...(((((((((...((((.....)))).)))))))))....).)))))).................................. (-13.44 = -13.38 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:13 2006