Locus 3751

Sequence ID 3R_DroMel_CAF1
Location 10,172,448 – 10,172,538
Length 90
Max. P 0.842980
window6012

overview

Window 2

Location 10,172,448 – 10,172,538
Length 90
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 89.27
Mean single sequence MFE -10.89
Consensus MFE -10.38
Energy contribution -10.25
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.54
Structure conservation index 0.95
SVM decision value 0.76
SVM RNA-class probability 0.842980
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10172448 90 + 27905053
AAAGCAAUUUAAAUUAAUACAAAGUGCACAACUCACACCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACGGCCACCCA-
...((..................(((((....((.....))....)))))......------------.....(((((.....)))))......))......- ( -12.20)
>DroSec_CAF1 30829 90 + 1
AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUCACCCCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACAGCCACCCAA
...((..................(((((..-.((.....))....)))))......------------.....(((((.....)))))......))....... ( -12.00)
>DroSim_CAF1 29975 90 + 1
AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUCACCCCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACAGCCACCCAA
...((..................(((((..-.((.....))....)))))......------------.....(((((.....)))))......))....... ( -12.00)
>DroEre_CAF1 31540 101 + 1
AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUUACCCCAACACUUCCACAUACACAUACACAUAGACAUACACUCGGAAAAACUGAGCAGACGGCCAACCA-
...((................(((((....-..........)))))...........................(((((.....)))))......))......- (  -7.34)
>consensus
AAAGCAAUUUAAAUUAAUACAAAGUGCACA_CUCACCCCGACACUUGCACAUACAC____________AUACACUCGGAAAAACUGAGCAGACAGCCACCCA_
...((..................(((((....((.....))....))))).......................(((((.....)))))......))....... (-10.38 = -10.25 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:10 2006