| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,171,038 – 10,171,128 |
| Length | 90 |
| Max. P | 0.830506 |
| Location | 10,171,038 – 10,171,128 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.42 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -19.02 |
| Energy contribution | -20.05 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10171038 90 - 27905053 GGGGUG--AUGUUCGGUGAAAGUAAGUGGAGGUCCGCUGUAAACGAAGCCU--UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ..((((--((((....((......(((((....))))).........((((--....((((((.....)))))))))).))....)))))))). ( -32.70) >DroSec_CAF1 29456 92 - 1 GGGGUGGUAUGUUCGGUGAAAGUAAGUGGAGGUCCGCUGUAAACGAAGCCU--UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ..((((((...((((.........(((((....))))).....))))((((--....((((((.....)))))))))).........)))))). ( -28.94) >DroSim_CAF1 28560 92 - 1 GGGGUGGUAUGUUCGGUGAAAGUAAGUGGAGGUCCGCUGUAAACGAAGCCU--UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ..((((((...((((.........(((((....))))).....))))((((--....((((((.....)))))))))).........)))))). ( -28.94) >DroEre_CAF1 30211 82 - 1 ----------GGGGGGUGAAAGUAAGUGGAGGUCCGCUGCAAACGAAGCCU--UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ----------.((..(((...(((.((((....))))))).......((((--....((((((.....))))))))))........)))..)). ( -28.10) >DroYak_CAF1 29401 82 - 1 ----------GUUCGGUGAAAGUAAGUGGAGGUCCGUUGCAAACGAAGCCU--UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ----------....(((((..((((.(((....))))))).......((((--....((((((.....))))))))))..........))))). ( -25.20) >DroPer_CAF1 33121 73 - 1 GAGGAA--AUGU---GGGAAAAUAAG-------------GAAGCGAAGCGGAGGCCGGCCUCCGC-UUGGGGGCGG--ACAAAUUACAUUACCA ..((.(--((((---((.........-------------....(.(((((((((....)))))))-)).)(.....--.)...))))))).)). ( -25.80) >consensus GGGGUG__AUGUUCGGUGAAAGUAAGUGGAGGUCCGCUGUAAACGAAGCCU__UUUGGCCUUCACGUCGAGGGCGGGCACAAAUUACAUUACCA ..............(((((..((((......(((((((........)))........((((((.....)))))))))).....)))).))))). (-19.02 = -20.05 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:09 2006