Locus 375

Sequence ID 3R_DroMel_CAF1
Location 1,424,139 – 1,424,252
Length 113
Max. P 0.646172
window623

overview

Window 3

Location 1,424,139 – 1,424,252
Length 113
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -17.40
Consensus MFE -12.45
Energy contribution -12.26
Covariance contribution -0.19
Combinations/Pair 1.22
Mean z-score -1.18
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.646172
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1424139 113 - 27905053
ACUCAAUCGGUGUCAAAA-U-AUGCAAAAUAAAAAGCCACAUUUUACUUGUCUUUAUUUUGUAAAAUUACUACCGCCAGCAAUCUAAAGAUUUCUAAUGUUGCAACAACAAAUAC--
.......(((((......-.-.(((((((((((.....(((.......))).))))))))))).......)))))...(((((....((....))...)))))............-- ( -15.36)
>DroPse_CAF1 7044 111 - 1
AUGUAAUUGGUGUCAAAA-U-AUGCAACAUGAAAAGCAACAUUUUACUUGUCUUUAUUUUGUGUAGAUAAUAA-ACCAACAAUCUAAAGAUUUCUUUUGUUGCAACAAAACU-AA--
.(((..((.((((.....-.-.....)))).))..((((((........(((((((..((((...........-....))))..)))))))......)))))).))).....-..-- ( -18.00)
>DroEre_CAF1 6167 112 - 1
UCUUAAUCGGUGUCAAAA-U-AUGCAAAAUUAAAAGCUACAUUUUACUUGUCUUUAUUUUGUGAAAUUGCUAU-ACCAACAAUCUAAAGAUUUCUAAUGUUGCAACAACAAUCAC--
..(((((...(((.....-.-..)))..)))))..((.(((((......(((((((..((((...........-....))))..)))))))....))))).))............-- ( -15.26)
>DroWil_CAF1 6205 111 - 1
AAAUAAUUGGUGUCGAAAUU-AUGCCAAAUGAAAAGCCACAUUUUACUUGUCUUUAUUGUGUCAAGAAAUU---UCCAGCAUUCUAAAGAUUUCUAAUGUUGCAACAUUAAAUAC--
......(((((((.......-))))))).......((.(((((......(((((((..((((...((....---))..))))..)))))))....))))).))............-- ( -19.10)
>DroMoj_CAF1 7629 109 - 1
AUAUAAUCGGUGUCAAAA-UAAUGCAAAAUUAAACGCCACAUUUUACUUGUCUUUAUUUAUUCGGA-----AA-ACUCGAUCUUUAAAGAUUUCUAAUGUUGCGACAAA-AAUAUUU
..........((((....-((((.....))))...((.(((((......(((((((.....((((.-----..-..))))....)))))))....))))).))))))..-....... ( -18.70)
>DroPer_CAF1 6711 111 - 1
AUGUAAUUGGUGUCAAAA-U-AUGCAACAUGAAAAGCAACAUUUUACUUGUCUUUAUUUUGUGUAGAUAAUAA-ACCAACAAUCUAAAGAUUUCUUUUGUUGCAACAAAACU-AA--
.(((..((.((((.....-.-.....)))).))..((((((........(((((((..((((...........-....))))..)))))))......)))))).))).....-..-- ( -18.00)
>consensus
AUAUAAUCGGUGUCAAAA_U_AUGCAAAAUGAAAAGCCACAUUUUACUUGUCUUUAUUUUGUGAAAAUAAUAA_ACCAACAAUCUAAAGAUUUCUAAUGUUGCAACAAAAAAUAC__
...................................((.(((((......(((((((..((((................))))..)))))))....))))).)).............. (-12.45 = -12.26 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:43 2006