Locus 3746

Sequence ID 3R_DroMel_CAF1
Location 10,163,310 – 10,163,400
Length 90
Max. P 0.719533
window6004

overview

Window 4

Location 10,163,310 – 10,163,400
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 91.77
Mean single sequence MFE -25.75
Consensus MFE -21.93
Energy contribution -22.10
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.719533
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10163310 90 + 27905053
---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG
---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60)
>DroPse_CAF1 24051 98 + 1
CGCGCACCUGAGUGGCAAUUACAUUCGGGUUACAUUAUGAGCCCUGCGUGGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGCGACAGUUG
....((.(((.(((((((((......(((((........)))))((((((((((..(((.....)))...))))).))))))))))))))..))).)) ( -30.90)
>DroSim_CAF1 20906 90 + 1
---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG
---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60)
>DroEre_CAF1 21924 90 + 1
---GCACCUGAGUGGCAAUUACAUUCGCGUU----UAUGAGC-GAGCGCUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG
---.((.(((..((((((((....((((...----.....))-))(((..((((..(((.....)))...))))...))).))))))))...))).)) ( -23.20)
>DroYak_CAF1 21369 90 + 1
---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG
---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60)
>DroPer_CAF1 24422 98 + 1
CGCGCACCUGAGUGGCAAUUACAUUCGGGUUACAUUAUGAGUCCUGCGUGGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGCGACAGUUG
((((((((((((((.......)))))))))..............((((((((((..(((.....)))...))))).)))))....).))))....... ( -29.60)
>consensus
___GCACCUGAGUGGCAAUUACAUUCGGGUU____UAUGAGC_GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG
.....(((((((((.......)))))))))...............(((..((((..(((.....)))...))))...))).((((((....)))))). (-21.93 = -22.10 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:02 2006