Locus 3745

Sequence ID 3R_DroMel_CAF1
Location 10,162,914 – 10,163,009
Length 95
Max. P 0.999025
window6003

overview

Window 3

Location 10,162,914 – 10,163,009
Length 95
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 85.86
Mean single sequence MFE -36.04
Consensus MFE -30.48
Energy contribution -30.68
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -3.16
Structure conservation index 0.85
SVM decision value 3.33
SVM RNA-class probability 0.999025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10162914 95 - 27905053
AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CAGCAGCAAUA---GCAGCAGUUUCACUGGCAUUUGGCCAAAU
.(((((((...((..((((((((......))))))))..)).(((((.....(((---(.((.((....---)).)).))))..)))))..)))))))... ( -36.00)
>DroSec_CAF1 21409 83 - 1
AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CG---------------GCAGUUUCACUGGCAGUUGGCCAAAU
.(((((((((((...((((((.(.((((((..........))))))...)...))---))---------------))((.....)).)))))))))))... ( -35.10)
>DroSim_CAF1 20488 83 - 1
AUGGUCAAUUGCAUGGUCUUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CG---------------GCAGUUUCACUGGCAGUUGGCCAAAU
.(((((((((((...(.(((((..((((((..........))))))...)).)))---).---------------.(((.....))))))))))))))... ( -33.20)
>DroEre_CAF1 21535 95 - 1
AUGGUCAAUUGCAUGGUCGGUGGAUGGCCCUAGCGAUUGUGGGCCAGAAAACAAG---CACCGGUAGCA---GCAGCAGUUUCACUGGCAGUUGGCCAAAU
.(((((((((((....((((((..((((((..........))))))(....)...---)))))).....---....(((.....))))))))))))))... ( -37.20)
>DroYak_CAF1 20943 101 - 1
UUGGUCAAUUGCAUGGUCGGUGGAUGGCCCUAGCGAUUGUGGGCCAGAAAACAAGUAGCAGCAGUAGCAGUGGCAGCAGUUUCACUGGCAGUUGGCCAAAU
((((((((((((.....(((((((((((((..........))))))........((.((.((....))....)).))...))))))))))))))))))).. ( -38.70)
>consensus
AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG___CA_C_G_A__A___GCAGCAGUUUCACUGGCAGUUGGCCAAAU
.(((((((((((............((((((..........))))))..............................(((.....))))))))))))))... (-30.48 = -30.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:01 2006