| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,156,204 – 10,156,303 |
| Length | 99 |
| Max. P | 0.754119 |
| Location | 10,156,204 – 10,156,303 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -21.52 |
| Energy contribution | -22.56 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10156204 99 - 27905053 AGAACCAGCCGCUCCACUCGAACAAACCGAGAAAUUGGACAUAAAACGAGAGGAGUCUCCGCAGCACAGGGAACUGCAGUUAAGUCUCCAAAGGGCGGC--------------------- .......(((((.((.((((......((((....))))........)))).((((.((..((....(((....)))..))..)).))))...)))))))--------------------- ( -33.14) >DroSim_CAF1 13889 99 - 1 AGAACCAGCCGCUCCACUCGAACAAACCGAGAAAUUGGACAUAAAACGAGAGGAGUCUCCGCAGCACCGGGAACUGCAGUUAAGUCUCCAAAGGGCGGC--------------------- .......(((((.((.((((......((((....))))........)))).((((.((..((.(((..(....)))).))..)).))))...)))))))--------------------- ( -33.04) >DroEre_CAF1 14929 99 - 1 AGAACCGGCCGCCCCACUCGAACAAACCGAGAAAUUGGACAUAAAACGAGAGGAGUCUCCGCAGCACCGGGAAUUACAGUUAAGUCUCCAAAGGGCGGC--------------------- .......(((((((..((((......((((....))))........)))).((((.(((((......))).(((....))).)).))))...)))))))--------------------- ( -31.74) >DroYak_CAF1 13986 99 - 1 AGAACCAGCCGCUCCACUCGAACAAACCGAAAAAUUGGACAUAAAACGAGAGGAGUCUCCGCAGCACCGGGAAUUGCAGUUAAGUCUCCAAAGGGCGGC--------------------- .......(((((.((.((((......((((....))))........)))).((((.((..((.(((........))).))..)).))))...)))))))--------------------- ( -29.84) >DroAna_CAF1 14147 114 - 1 GGAGCCGGCCGCUCCUCUCGAGCAAACCGAAAAACUGGACAUCAAGCUGGAGGAGUCUCCGCAGCACCGCGAACUGCAACUCAGCCUGCAACGGGCGGC---GGCCGC---AGCGGCGGU ...(((((..((((((((..(((...(((......))).......)))))))))))..))((.((.((((((........)).(((((...))))).))---))..))---.)))))... ( -41.20) >DroPer_CAF1 15215 120 - 1 GGAGCCGGCCGCCCCCUUAGAGCAGACUGAGAAGCUGGACAUCAAGCUGGAAGAGUCGCCGCAGCAUCGCGAGCUCCAGUUGAGCCUGCAGCGUGCUGCUGUGGCCGCCAAGGCAGCCGC .....((((.((((((((((......))))).((((........))))))..(.((.(((((((((.((((.((((.....))))......)))).))))))))).)))..))).)))). ( -48.70) >consensus AGAACCAGCCGCUCCACUCGAACAAACCGAGAAAUUGGACAUAAAACGAGAGGAGUCUCCGCAGCACCGGGAACUGCAGUUAAGUCUCCAAAGGGCGGC_____________________ .......(((((((..((((......((((....))))........)))).((((.((..((.(((........))).))..)).))))...)))))))..................... (-21.52 = -22.56 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:59 2006