| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,156,089 – 10,156,193 |
| Length | 104 |
| Max. P | 0.954730 |
| Location | 10,156,089 – 10,156,193 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 72.22 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -19.35 |
| Energy contribution | -19.94 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10156089 104 + 27905053 UUUGACCCUCU---------UUUCCGGCUGCAUUUGUUUGUUGGCCAUGGCCAAGGCAAUGGAAAUUUUACUCGCGGCCAAUUUGCUUUCAAAAUCCAUUUCCGUUAGCUGGC- ...........---------...((((((((.........(((((....)))))((.((((((..((((....((((.....))))....)))))))))).))).))))))).- ( -27.10) >DroVir_CAF1 13899 105 + 1 UUUGGCCGAU---------UCACUUGGCUGCUGCUUUGUGUUGGCCAUGGCCACUGCAAUGGAUAUCUUUGAGGCAGAUAGCUUGCUCUCAAAGUCCAUUUCAGCCAGUAACGU ..(((((((.---------.(((..(((....)))..))))))))))((((...((.((((((...(((((((((((.....)))).))))))))))))).))))))....... ( -41.50) >DroGri_CAF1 15534 105 + 1 UUUAGACGAC---------ACAUCGUUCGGCAACUUUGUGUUGGCCAUGGCCAGUGCAAUCGAUAUCUUCGAGGCGGCCAGCUUACUCUCAAAAUCCAUUUCGGCCAGCAACGC .(..(((((.---------...)))))..)........((((((((.(((((...((..((((.....)))).)))))))(....)................)))))))).... ( -28.70) >DroSim_CAF1 13774 104 + 1 UUUGACCAUCU---------UUUCCGGCUUCAUUUGUUUAUUGGCCAUGGCCAAGGCAAUGGAUAUUUUACUGGCGGCCAAUUUGCUUUCAAAAUCCAUUUCCGUUAGCUGGC- ...........---------...((((((.(.........(((((....)))))((.(((((((.(((....(((((.....)))))...)))))))))).)))..)))))).- ( -28.30) >DroYak_CAF1 13871 104 + 1 UUUGACCAUCU---------UCUCCGGCUGCAUUUGUUUGUUGGCCAUGGCCAAGGCAAUGGAUAUUUUACUGGCGGCCAAUUUGCUUUCAAAAUCCAUUUCCGUUAGCUGGC- ...........---------...((((((((.........(((((....)))))((.(((((((.(((....(((((.....)))))...)))))))))).))).))))))).- ( -29.90) >DroAna_CAF1 14002 113 + 1 GCCAGCCGUCUCCAUUGAGUCCUCCCGCUGCAGCUGGUUGUUGGCCAUGGCCAGGGCUAUGGAUAUCUUGCUGGCCGCCAGCUUGCUUUCGAAGUCCAUUUCCGUCAGCUGAG- ((((((.((.(((((..(((((.((.((....)).))....((((....)))))))))))))).))...))))))...(((((.((....((((....)))).)).)))))..- ( -39.60) >consensus UUUGACCGUCU_________CAUCCGGCUGCAUCUGUUUGUUGGCCAUGGCCAAGGCAAUGGAUAUCUUACUGGCGGCCAACUUGCUUUCAAAAUCCAUUUCCGUCAGCUGGC_ ........................(((((((.........(((((....)))))((.(((((((........(((((.....)))))......))))))).))).))))))... (-19.35 = -19.94 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:58 2006