Locus 3741

Sequence ID 3R_DroMel_CAF1
Location 10,155,285 – 10,155,400
Length 115
Max. P 0.966131
window5998

overview

Window 8

Location 10,155,285 – 10,155,400
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 75.78
Mean single sequence MFE -21.70
Consensus MFE -12.72
Energy contribution -12.40
Covariance contribution -0.32
Combinations/Pair 1.20
Mean z-score -2.27
Structure conservation index 0.59
SVM decision value 1.59
SVM RNA-class probability 0.966131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10155285 115 - 27905053
CGUUAUCGUGUUAAUCAGGUCAUCAGAAAACCUUUUGUUCCUGAAAAGAAAUAAGAAAAGCAUGUUUUCUAAAUUUGUUUUUAUAUAUUUUAAUGAUACCUAAACCUGAUUGGCA
........((((((((((((..((((..(((.....))).))))...((((((..(((((((.(((.....))).)))))))...))))))............)))))))))))) ( -24.20)
>DroEre_CAF1 14033 92 - 1
CGUUAUCGU--UAUUCAGGUCAUCAAAAAA------------UAAGAGAAGCAU---------GUUUCCUAAAUUCAUUUUUGUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA
.......((--(((((((((..........------------..((.((((...---------.)))))).........(((((((((....))))..)))))))))))))))). ( -18.00)
>DroYak_CAF1 13079 92 - 1
CGUUAUCGU--UAUUCAGGUCAUCAAAAAA------------UAAGCGAAGCAU---------GUUUCCUAAAUUCGUUUUUAUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA
.......((--(((((((((..........------------..((.((((...---------.))))))...((((((..(((........)))..))))))))))))))))). ( -22.90)
>consensus
CGUUAUCGU__UAUUCAGGUCAUCAAAAAA____________UAAGAGAAGCAU_________GUUUCCUAAAUUCGUUUUUAUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA
.......((..(((((((((...........................(((((...........))))).....((((((..(((........)))..))))))))))))))))). (-12.72 = -12.40 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:57 2006