Locus 374

Sequence ID 3R_DroMel_CAF1
Location 1,423,401 – 1,423,500
Length 99
Max. P 0.744676
window622

overview

Window 2

Location 1,423,401 – 1,423,500
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -21.85
Consensus MFE -17.61
Energy contribution -16.58
Covariance contribution -1.03
Combinations/Pair 1.22
Mean z-score -1.34
Structure conservation index 0.81
SVM decision value 0.46
SVM RNA-class probability 0.744676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1423401 99 - 27905053
AAAGCAAGUAAGUUUUUAGUUGUG------AUUUGUUUUUAGCCCCGGAAUGUUCUCAGGAAGAUGACUCAAUGAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU
(((((((((..(........)...------))))))))).......((((((((.....(((((((.(.((((......)))).))))))))....)))))))). ( -22.80)
>DroPse_CAF1 6325 98 - 1
AAAGCAAGUAAGUUUUAAAUUUAGACUGUAGUCUCUU-------AUGGAAUGUUCUCAGGAAGAUGUUAUAACCAUUCAGUUGUGUAUCUUUAAUUGAUGUUCCU
(((((......)))))......((((....))))...-------..((((((((.....((((((((.(((((......)))))))))))))....)))))))). ( -18.00)
>DroSec_CAF1 5296 99 - 1
AAAGCAAGUAAGUUUUUAGUUGUG------AUUUGUUUUUAGCCCCGGAAUGUUCUCAGGAAGAUGACUCAAUGAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU
(((((((((..(........)...------))))))))).......((((((((.....(((((((.(.((((......)))).))))))))....)))))))). ( -22.80)
>DroEre_CAF1 5470 97 - 1
AAAGCAAGUAAGUUUAUA-----GAUUG--AUUUGUUUCUAGC-CCGGAAUGUUCUCAGGAAGAUGUCUCGAUCACCCAGUUGUGCAUCUUUAAUUGAUAUUCCU
.((((((((.((((....-----)))).--)))))))).....-..((((((((.....((((((((..((((......)))).))))))))....)))))))). ( -24.40)
>DroYak_CAF1 5901 102 - 1
AAAGCAAGUAAGUUUAUAAGUCUGAUUU--GUUUGUUUUCAGC-CCGGAAUGUUCUCAGGAAGAUGACUCAAUCAUUCAGUUGUACAUCUUUAAUUGAUAUUCCU
((((((((((((((.........)))))--)))))))))....-..((((((((.....(((((((...((((......))))..)))))))....)))))))). ( -23.60)
>DroPer_CAF1 5992 98 - 1
AAAGCAAGUAAGUUUUAAAUUUAGACUGCAGUCUGUU-------AUGGAAUGUUCUCAGGAAGAUGUUAUAACCAUUCAGUUGUGUAUCUUUAAUUGAUGUUCCU
(((((......))))).....(((((....)))))..-------..((((((((.....((((((((.(((((......)))))))))))))....)))))))). ( -19.50)
>consensus
AAAGCAAGUAAGUUUUUAAUUGUGA_UG__AUUUGUUUUUAGC_CCGGAAUGUUCUCAGGAAGAUGACUCAAUCAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU
.((((......))))...............................((((((((.....(((((((...((((......))))..)))))))....)))))))). (-17.61 = -16.58 +  -1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:42 2006