| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,147,533 – 10,147,644 |
| Length | 111 |
| Max. P | 0.513172 |
| Location | 10,147,533 – 10,147,644 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Mean single sequence MFE | -44.37 |
| Consensus MFE | -25.50 |
| Energy contribution | -25.70 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10147533 111 + 27905053 UCGGUAGCGCACCCAUGAACGCACCAGCAUUUGUGGGCAAGGCCGGUGCAACGAAGCUGAGAUCGGGGAUCAGGGAGAUGCGUGGAGCCACCUUGGCGUUGCCGAUUUGGA ((((((((((.((((..((.((....)).))..))))(((((..(((...(((...((..((((...))))..)).....)))...))).)))))))))))))))...... ( -46.10) >DroVir_CAF1 5501 111 + 1 UGGGCAGCGAACUCAUGAAGGCACCCGCAUUGGUGGGCAAUGCUGGCGCCACAAAGCUCAGAUCGGGUAUUAGGGAUAUGCGUGGUGCCACCUUUGCAUUGCUCAGAUGGA (((((((((((........(((((((((....)))))...))))((((((((...((((.....)))).....(......)))))))))...)))))..))))))...... ( -38.90) >DroPse_CAF1 6580 111 + 1 UCGGCAGCGAUCCCAUAAAGGCCCCCGCAUUUGUGGGCAAGGCCGGGGCCACAAAGCUCAGAUCGGGUAUGACGGAUAUGAGCGGUGCCACCUUGGCAUUGCCUAUCUGGA ...((..(((((.......(((((((((....)))))...)))).((((......)))).))))).))....((((((.(.((((((((.....))))))))))))))).. ( -46.30) >DroGri_CAF1 6292 111 + 1 UGGGCAAAGAGCUCAUGAAGGCGCCAGCAUUGGUUGGCAGUGCCGGUGCCACAAAGCUCAGAUCGGGUAUUAGGGAGAUGCGUGGCGCCACCUUUGCAUUGCCCAGAUGAA (((((((.(((((..((..((((((.((((((.....)))))).)))))).)).))))).......(((..(((..(.(((...))))..))).))).)))))))...... ( -44.80) >DroMoj_CAF1 5801 111 + 1 UGGGCAGCGAACUCAUAAAGGCGCCCGCAUUGGCAGGCAAUGCCGGGGCCACGAAGCUCAGGUCGGGUAUCAAGGAGAUGCGUGGCGCCACCUUUGCAUUGCUCAAAUGAA (((((((((((........(((((((((((((((.(((...)))...)))..((.((((.....)))).)).....)))))).))))))...)))))..))))))...... ( -44.50) >DroAna_CAF1 5856 111 + 1 UUGGCAGCACGCCCAUGAACGCUCCGGCAUUCGUGGGCAGAGCCGGAGCCACGAAACUGAGAUCGGGUAUCAGGGAGAUCCGAGGGGCCACCUUCGCAUUGCCAAUCUGGA (((((((...(((((((((.((....)).)))))))))...((.(((.((..((..(((....)))...))..))...)))(((((....))))))).)))))))...... ( -45.60) >consensus UGGGCAGCGAACCCAUGAAGGCACCCGCAUUGGUGGGCAAUGCCGGGGCCACAAAGCUCAGAUCGGGUAUCAGGGAGAUGCGUGGCGCCACCUUUGCAUUGCCCAUAUGGA (((((((............((((((.((....)).(((...))))))))).....((..((....(((.(((.(......).))).)))..))..)).)))))))...... (-25.50 = -25.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:53 2006