Locus 3736

Sequence ID 3R_DroMel_CAF1
Location 10,133,731 – 10,133,825
Length 94
Max. P 0.958269
window5987

overview

Window 7

Location 10,133,731 – 10,133,825
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.06
Mean single sequence MFE -29.58
Consensus MFE -18.92
Energy contribution -20.15
Covariance contribution 1.23
Combinations/Pair 1.17
Mean z-score -2.26
Structure conservation index 0.64
SVM decision value 1.49
SVM RNA-class probability 0.958269
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10133731 94 - 27905053
UUAGCAGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAGUAAAUCACGUGCCUAAAAGUAGACUAAAGCGGUCAC---UGGUUAU
.((((.((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))).((((.....))))..---..)))). ( -31.10)
>DroVir_CAF1 24447 100 - 1
UGCGCUGCUUCUAGGCGU-UGCUGACGUGACGCUGGGCGAAGA--GAUCGAUUUAAAUAAAUCACGAGCCUGAAAGUAGGCUAACUUACGCAAUCCCAUUGAU
((((.((((....(((((-..(....)..))))).))))..((--(...(((((....)))))...((((((....))))))..))).))))........... ( -28.30)
>DroSim_CAF1 8860 94 - 1
UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAGCACGUGCCUAAAAGUAGACUAAAGCGGGCAC---UGGUGAU
(((((((((((((((((((((((.--.(((.(((.-((.....)).)---.)))))....))))))))))))))))))).)))).........---....... ( -32.30)
>DroEre_CAF1 9350 92 - 1
UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAGGCGGACA-----AGUGAU
((((((((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))))).))))........-----...... ( -32.80)
>DroYak_CAF1 9317 94 - 1
UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAGGCGGGCAG---CAGUGAU
((((((((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))))).)))).((.....)---)...... ( -34.50)
>DroAna_CAF1 8682 90 - 1
GGAGCUGUUUUUAGGCG----UUG--CUGACGCUG-GCAAAAUCAAA---UUUUCAAUAAGUCACGUGCCUAAAAGUAGGCUAUCCCAGGGUU---AAUUGAU
((((((..(((((((((----(((--((......)-))))......(---(((.....))))....)))))))))...))))...))......---....... ( -18.50)
>consensus
UUAGCUGCUUUUGGGCGUGUGUUG__GUGACGCUG_GCAAAAUGUGA___UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAAGCGGGCAC___CAGUGAU
(((((((((((((((((((((......(((.......................)))......))))))))))))))))).))))................... (-18.92 = -20.15 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006