| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,133,287 – 10,133,396 |
| Length | 109 |
| Max. P | 0.615270 |
| Location | 10,133,287 – 10,133,396 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.05 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10133287 109 + 27905053 UUUCUUUCUU---UUACUGGGAGACGUCUUGAUCUUGGUAGUUUCCACGGCUGUCACGGUAGCACUGGGUGUCUUUUUCUCGUUCAGAAUCUUCACAGUGGAAGCAGCCGGA ..(((..(..---.....)..)))..........(((((.((((((((.((((......)))).(((..((.........))..)))..........)))))))).))))). ( -31.20) >DroSec_CAF1 8834 109 + 1 UUUCUUUUUU---UUACUGGGAGAGGCCUUCAUCUUGGCAGUUUCUACGGCUGUCACGGUAGCACUGGGUGUCUUUUUCUCAUUCAGAAUCUUUACAGUGGAGGCAGCCGGA ..........---....((((((..(((........)))..))))))((((((((.........(((((((.........)))))))..(((.......))))))))))).. ( -32.70) >DroSim_CAF1 8416 109 + 1 UUUCUUUUUU---UUACUGGGAGACGCCUUGAUCUUGGCAGUUUCCACGGCUGUCACGGUAGCACUGGGUGUCUUUUUCUCAUUCAGUAUCUUUACAGUGGAGGCAGCCGGA ..........---......(((((((((........))).)))))).((((((((((.((((.((((((((.........))))))))....)))).)))...))))))).. ( -37.40) >DroEre_CAF1 8911 109 + 1 UUUCUUUCUC---UUAUUGGGAGACGUCUUGAUCUUGGCAGUUUCCACGGCUGUCACGGUGGCACUGGGUGUCUUCUUUUCAUUAAGGAUUUUCACAGUCGAGGCAGCCGUU ..........---......(((((((((........))).))))))(((((((((.(((.(((((...))))).(((((.....))))).........))).))))))))). ( -34.40) >DroYak_CAF1 8877 109 + 1 UUUCUUUCUU---UUACUGGGAGACGUCUUGAUCUUGGCCGUUUCCACGGCUGUCACGGUGGCACUGGGGGUCUUCUUUUCAUUUAGAAUCUUUACAGUGGAGGCAGUCGGA ..........---......(((((((((........)).))))))).((((((((.(....)(((((..((..((((........))))..))..)))))..)))))))).. ( -30.90) >DroPer_CAF1 8646 109 + 1 UUUCUUCUUCUGUUUGGUUGGGGACGUCUUGAUCUUUGUCGUCUCCACAGCCGUAGCCGUCGAUGGGGCCAUUCGCUUCUCGUUUAAUAUCUUGACAG---AGCCCGAUGGA .......(((((((.(((((((((((.(.........).))))))))..)))(((.....(((.(((((.....)))))))).....)))...)))))---))......... ( -29.10) >consensus UUUCUUUCUU___UUACUGGGAGACGUCUUGAUCUUGGCAGUUUCCACGGCUGUCACGGUAGCACUGGGUGUCUUCUUCUCAUUCAGAAUCUUUACAGUGGAGGCAGCCGGA ...................(((((((((........))).)))))).((((((((((.((((..(((((((.........))))))).....)))).)))...))))))).. (-22.66 = -23.05 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:45 2006