| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,124,934 – 10,125,042 |
| Length | 108 |
| Max. P | 0.789046 |
| Location | 10,124,934 – 10,125,042 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 97.55 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -26.22 |
| Energy contribution | -26.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10124934 108 + 27905053 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUU-CUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).-...))))))......(((((.(((................))))))))..(((....)))..... ( -26.49) >DroSec_CAF1 416 109 + 1 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).....))))))......(((((.(((................))))))))..(((....)))..... ( -26.49) >DroSim_CAF1 443 109 + 1 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUGCCUCCCUUUAUUAUUGACAUCUAAUCUCCAUGGAAUAAU ((.(((.((((((....))))))...)))))...(((((((...((((((((((.....(((.((....)).)))........)))))).)))).....)))))))... ( -29.32) >consensus UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).....))))))......(((((.(((................))))))))..(((....)))..... (-26.22 = -26.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:41 2006