Locus 373

Sequence ID 3R_DroMel_CAF1
Location 1,423,055 – 1,423,174
Length 119
Max. P 0.564595
window621

overview

Window 1

Location 1,423,055 – 1,423,174
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 86.27
Mean single sequence MFE -33.99
Consensus MFE -25.26
Energy contribution -23.68
Covariance contribution -1.58
Combinations/Pair 1.48
Mean z-score -2.48
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.564595
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1423055 119 + 27905053
UUAUCUCAUUAUAUGGCUUCUCAUCGUUGAUAUCAUCGAUGAGCGCCUGCUGCAACUCACGCUUCGCCUCCUGGCUAGCCUGAGCCUUAUGUAGCUUGACGAUCUCGUUAAGUUCUUUG
..............(((..(((((((.((....)).))))))).))).((((((.((((.(((..(((....))).))).)))).....))))))((((((....))))))........ ( -39.70)
>DroVir_CAF1 4636 119 + 1
UUAUUUCAUUAUGUGCCUUCUCAUCGUUAAUAUCAUCGAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUGGCCUGAGCCUUAUGCAAUUUUAUGAUCUCAUUGAGUUCUUUG
..............((.(((((((((..........)))))))))...))(((((((((.(.(..(((....)))..)).)))))....)))).......((.(((...))).)).... ( -27.80)
>DroGri_CAF1 4961 119 + 1
UUAUCUCAUUAUGUGCCUUCUCGUCAUUAAUAUCAUCGAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUGGCCUGUGCCUUAUGCAACUUAAUGAUCUCAUUGAGUUCUUUG
............(((((((((((.............))).))))))..)).(((...((((.(..(((....)))..)..)))).....)))(((((((((....)))))))))..... ( -29.52)
>DroWil_CAF1 5090 119 + 1
UUAUUUCAUUAUGCGCCUUCUCGUCAUUAAUAUCAUCGAUGAGUGUUUGUUGGAGCUCACGCUUAGCCUCUUGGCUAGCCUGUGCUUUAUGCAAUUUGAUGAUCUCAUUAAGUUCUUUG
...........((((....((((((............)))))).......((((((.((.(((.((((....))))))).)).))))))))))((((((((....))))))))...... ( -31.30)
>DroMoj_CAF1 6352 119 + 1
UUAUCUCAUUGUGUGCCUUUUCGUCGUUAAUAUCGUCAAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUAGCCUGCGCUUUAUGCAAUUUAAUGAUCUCAUUGAGUUCUUUG
..........((..((((((..(.((.......)).)...))))))..)).((((.....(((.((((....)))))))))))((.....))(((((((((....)))))))))..... ( -26.30)
>DroAna_CAF1 4898 119 + 1
UUAUCUCAUUGUGGGCCUUCUCAUCGUUGAUAUCAUCGAUGAGAGCCUGCUGCAGCUCGCGCUUAGCCUCCUGGCUAGCCUGAGCCUUGUGCAGCUUGAUGAUCUCAUUGAGUUCCUUG
....((((.((.((((..((((((((.((....)).))))))))))))(((((((((((.(((.((((....))))))).)))))....))))))..........)).))))....... ( -49.30)
>consensus
UUAUCUCAUUAUGUGCCUUCUCAUCGUUAAUAUCAUCGAUGAGGGUCUGCUGCAGCUCACGCUUGGCCUCUUGGCUAGCCUGAGCCUUAUGCAACUUGAUGAUCUCAUUGAGUUCUUUG
.................(((((((((..........)))))))))..(((....((.((.(((.((((....))))))).)).)).....)))((((((((....))))))))...... (-25.26 = -23.68 +  -1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:41 2006