| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,117,942 – 10,118,040 |
| Length | 98 |
| Max. P | 0.632716 |
| Location | 10,117,942 – 10,118,040 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.70 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -15.32 |
| Energy contribution | -14.92 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10117942 98 + 27905053 AAAUGGCCAAU------GUG------CGAGUGUGGAAAAAUAGCCAUGCAGCACAGCCAGUGCACGCGAAAAAAUGUCUGCCUAAU----------UAUAGGGAAAAAAUUUUAAUUUAA ...((((...(------(((------(..((((((........)))))).)))))))))...........(((((...(.((((..----------..)))).)....)))))....... ( -22.90) >DroSec_CAF1 27426 101 + 1 AAAUGGCCAAUGAGUGUGUG------CGAGUGUGGAAAAAUAGCCAUGCAGCACAGCCAGUGCACUCGAAAAAAUAACUGCCUAAU----------UAAAGGGAAAAAAUUUUAAUU--- ....(((...((((((((((------(..((((((........)))))).)))).......)))))))...........))).(((----------(((((........))))))))--- ( -21.95) >DroSim_CAF1 23707 101 + 1 AAAUGGCCAAUGAGUGUGUG------CGAGUGUGGAAAAAUAGCCAUGCAGCACAGCCAGUGCACUCGAAAAAAUAACUGCCUAAU----------UAUAUGGAACAAAUUGUAAUU--- ....(((...((((((((((------(..((((((........)))))).)))).......)))))))...........))).(((----------((((..........)))))))--- ( -21.25) >DroEre_CAF1 27209 104 + 1 AAAUGGCCAAUGGGUGUG--------CGAGUGUGGAAAAAUAGCCGUGCAGCACAGCCAGUGCACGCGAAAAAAUAUGUGCUUAAUUGCCGUCUUUUAUAAGGAAAAA-C-------UAA ..(((((...(((.((((--------(..(..(((........)))..).))))).)))..(((((..........)))))......)))))................-.-------... ( -29.20) >DroYak_CAF1 27837 119 + 1 AAAUGGCCAAUGAGUUUGUGUUUCCACGAGUGUGGAAAAAUAGCCAUGCAGCACAACCAGUGCACGCGGAGAAAUAUCUGCUUAAUUGCUGUUUUUUAUAGGGAAAAA-UUGGGACUUAG ......(((((...(((.(((.(((((....)))))((((((((......((((.....))))..(((((......)))))......))))))))..))).)))...)-))))....... ( -32.20) >consensus AAAUGGCCAAUGAGUGUGUG______CGAGUGUGGAAAAAUAGCCAUGCAGCACAGCCAGUGCACGCGAAAAAAUAUCUGCCUAAU__________UAUAGGGAAAAAAUUGUAAUUUA_ ....(((......................(..(((........)))..).((((.....))))................)))...................................... (-15.32 = -14.92 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:31 2006