| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,116,510 – 10,116,620 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 10,116,510 – 10,116,620 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.18 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -16.89 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10116510 110 + 27905053 AGGCCUACAAGGAUUGGAAACUGCAUUCGCAGGUGAGAAAUCUAGUUAAUUAUACUAUUAG--UUAGAAAGGUAAGC--------ACUCAAGGCUACCUACCUGUAUGUAGGUGUCAAUC ..(((((((.((((.(....)...))))((((((......((((..((((......)))).--.)))).(((((.((--------.(....)))))))))))))).)))))))....... ( -33.40) >DroSec_CAF1 25898 104 + 1 AGGCCUACAAGGAUUGGAAACUGCAUUCGCAGGUGAGAAACCUAGUUAAUAAUACUAUUAG--AUAGAAAGGUAAAC--------ACUCAAGGCUACCU------AUGUAGGUGUCAGUC ..((((((((((........((((....)))).((((....(((.((((((....))))))--.)))...(.....)--------.))))......)))------.)))))))....... ( -24.90) >DroSim_CAF1 22165 104 + 1 AGGCCUACAAGGAUUGGAAACUGCAUUCGCAGGUGAGAAAUCUAGUUAAUAAUACUAUUAG--AUAGAAAGGUAAAC--------ACUCAAGGCUACCU------AUGUAGGUGUCAGUC ..((((((((((........((((....)))).((((...((((.((((((....))))))--.))))..(.....)--------.))))......)))------.)))))))....... ( -26.50) >DroYak_CAF1 26340 110 + 1 AGGCCUACAAGGAUUGGAAGCUGCACUCGCAGGUAAGCAAUUCAGUUAGUAAUACUACUUGCAUUAGAAAGGUAAUCAGGUAAUAACUCAAGGCUAC----------GUAGGUGUCGCUG ..((((((..((((((..(.((((....)))).)...))))))(((((((..((.((((((.((((......)))))))))).)))))...))))..----------))))))....... ( -26.20) >consensus AGGCCUACAAGGAUUGGAAACUGCAUUCGCAGGUGAGAAAUCUAGUUAAUAAUACUAUUAG__AUAGAAAGGUAAAC________ACUCAAGGCUACCU______AUGUAGGUGUCAGUC ..((((((..(((((.....((((....))))......)))))..........................(((((..(..............)..)))))........))))))....... (-16.89 = -17.27 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:29 2006