Locus 3717

Sequence ID 3R_DroMel_CAF1
Location 10,094,373 – 10,094,481
Length 108
Max. P 0.702429
window5954

overview

Window 4

Location 10,094,373 – 10,094,481
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.75
Mean single sequence MFE -39.22
Consensus MFE -14.81
Energy contribution -15.84
Covariance contribution 1.03
Combinations/Pair 1.41
Mean z-score -2.01
Structure conservation index 0.38
SVM decision value 0.36
SVM RNA-class probability 0.702429
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10094373 108 - 27905053
---------UUAUGGGGCAGAAUCUCCUCCAGCCGCAGUUGUUGUUCCAGAGCAGCACCCAGACUCAGGCUCCGCAGAUAAUCUUGCCUCAG---GCUCAGCCCCAGAACAUCAUUUCGU
---------...((((((.((..((.....((((..((((((((((....))))))).....)))..))))..((((......))))...))---..)).)))))).............. ( -29.80)
>DroVir_CAF1 7870 117 - 1
CCACGCAGCUGUUGGGCCAAAAUCUGCUGCAGCCGCAGCUACUCUUCCAGAGCAAUGCGCAGCCGCAGACGCAGCAGCUGUUGUUGCCGCAG---ACGCAGGCACAGAACAUCAUCUCGU
....((((((((((.(......(((((.((.((.(((....(((.....)))...))))).)).)))))).))))))))))(((.(((((..---..)).)))))).............. ( -41.60)
>DroWil_CAF1 8735 109 - 1
--------UUGCUGGGGCAGAGUUUGCUGCAACCGCAGCUACUCUUCCAGAGUAAUGCACAGGCGCAGGCGCCGCAGUUGAUCCUCCCCCAG---ACGCAACCGCAGAAUAUCAUUUCAU
--------...((((((.((..((.(((((....(((..(((((.....))))).)))...((((....))))))))).))..)).))))))---..((....)).(((......))).. ( -43.60)
>DroMoj_CAF1 6857 117 - 1
CCACCCAGCUGCUUGGUCAGAAUUUGCUGCAGCCCCAGCUGCUGUUUCAGAGCAACUCGCAGCCGCAAACGUCGCAGCUGCUGCUGCCGCAA---ACCCAGGCGCAGAACAUCAUUUCGU
.......((.((((((......(((((.(((((..((((((((((((..(((...)))((....)))))))..)))))))..))))).))))---).))))))))............... ( -41.30)
>DroAna_CAF1 8424 108 - 1
---------UGAUGGGUCAAAAUCUGCUGCAGCCGCAGUUGCUCUUCCAGAGCAGCGCGCAGGCGCAGACUCCUCAACUAAUUCUCCCCCAG---ACACAGCCGCAGAAUAUCAUCUCAU
---------.(((((.......(((((.((.(((((.(((((((.....)))))))..)).)))..................(((.....))---)....)).)))))...))))).... ( -32.20)
>DroPer_CAF1 3995 117 - 1
---GACAGCUGCUGGGGCAGGGCAUGCUGCAGCCGCAGCUCCUCUUCCAGAGCAAUGCCCAGCAGCAGCAUCCGCAGCUGAUCCUGCCGCAGCACACCCAGCCGCAGAACAUCAUCUCGU
---....((.((((((((.(((((((((((....)))))..(((.....)))..)))))).((.((((.(((.......))).)))).)).))...)))))).))............... ( -46.80)
>consensus
________CUGCUGGGGCAGAAUCUGCUGCAGCCGCAGCUGCUCUUCCAGAGCAACGCGCAGCCGCAGACGCCGCAGCUGAUCCUGCCGCAG___ACCCAGCCGCAGAACAUCAUCUCGU
...........(((.(((.......(((((....)))))(((((.....))))).......((.((((...............)))).))..........))).)))............. (-14.81 = -15.84 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:14 2006