Locus 3714

Sequence ID 3R_DroMel_CAF1
Location 10,088,827 – 10,088,947
Length 120
Max. P 0.792460
window5950

overview

Window 0

Location 10,088,827 – 10,088,947
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -46.37
Consensus MFE -25.42
Energy contribution -26.27
Covariance contribution 0.84
Combinations/Pair 1.59
Mean z-score -1.75
Structure conservation index 0.55
SVM decision value 0.59
SVM RNA-class probability 0.792460
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10088827 120 - 27905053
CUGUUUGGCCUCUUGCGCUGCUUUGGCGGCACUUAGUGCCGCCUUCUUGGUCUUAUCGUAAUCUAAUCGAGCUUCGCUAAGUUGCCGCAUUAGGACAUUAACCCGCCGCUGGGCAGCCUC
.......((.....))(((((.(..(((((...((((((.((...((((((....(((.........))).....))))))..)).))))))((........)))))))..))))))... ( -41.20)
>DroGri_CAF1 179492 120 - 1
UUGCUUGGCUUCGUUGGCCGCACACAUUGCUCUGUAGGCAGCCUUUUUGGUCUUGGCGUAGUCGUUACGUGCUUCGCUCAGUUGCCGCAGGAGCACACCGACGCGCUUCUGGGCUGCUUC
.(((..((((.....))))(((.....)))...)))((((((((....((....(((((.((((....(((((((((.........)).)))))))..))))))))).)))))))))).. ( -42.80)
>DroSec_CAF1 147559 120 - 1
CUGUUUGGCGUCUUGGGCCGCUUUGGCGGCACUUUGUGCCGCCUUCUUGGUCUUAUCGUAGUCCAAUCGAGCUUCGCAGAGUUGCCGCAUUAGCACAUUAACACGCCGCUGGGCAGCCUC
(((((((((((.((((...(((...(((((((((((((..((....((((.((......)).))))....))..))))))).))))))...)))...)))).))))))...))))).... ( -46.50)
>DroEre_CAF1 159865 120 - 1
CUGUUUGGCUUCCUGGGCUGCUUUGGCUGCAUUGAGUGCCGCCUUCUUGGUCUUCUCGAAGUCCAUUCGAGCUUCGCUGAGCUGGCGCAUCAGCUCAGUAACCCGCCGCUGAGCAGCCUC
..............(((((((.(..((.((...(((....(((.....)))...)))((((..(....)..))))((((((((((....)))))))))).....)).))..)))))))). ( -47.70)
>DroYak_CAF1 154806 120 - 1
CUGCUUGGCUUCUUGGGCGGCUCUGGCUGCACUGAGUGCCGCCUUCUUGGUCUUCUCGAAGUCUAUUCGAGCCUCGCUAAGUUGGCGCAUCAGCUCAGUAACCCGCCGCUGAGCAGCCUC
(((((..((....((((((((....)))))(((((((..((((..((((((...((((((.....))))))....))))))..)))).....)))))))...)))..))..))))).... ( -53.20)
>DroPer_CAF1 150860 120 - 1
CUGCUUGGCCUCCUUGGCGGCACAGAUGGCCUUAUAGGCCUCCUUCUUGGUCUUCCCAUAGUCGGCGCGGGCAUCCCUCAGCUGGCGGAGCAGGACACCCACCCGGUUGUGGGCGGCGUC
(((..(.(((.....))).)..)))...(((....(((((........))))).((((((..(((.(.(((..((((((.(....).)))..)))..))).))))..)))))).)))... ( -46.80)
>consensus
CUGCUUGGCUUCUUGGGCCGCUCUGGCGGCACUGAGUGCCGCCUUCUUGGUCUUCUCGUAGUCCAUUCGAGCUUCGCUAAGUUGCCGCAUCAGCACACUAACCCGCCGCUGGGCAGCCUC
(((((..((......(((.((((.((((((((...))))))))....(((.((......)).)))...))))...(((((((....)).)))))..........)))))..))))).... (-25.42 = -26.27 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:10 2006