Locus 3709

Sequence ID 3R_DroMel_CAF1
Location 10,085,395 – 10,085,491
Length 96
Max. P 0.641208
window5943

overview

Window 3

Location 10,085,395 – 10,085,491
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.81
Mean single sequence MFE -30.02
Consensus MFE -21.18
Energy contribution -20.60
Covariance contribution -0.58
Combinations/Pair 1.17
Mean z-score -1.19
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.641208
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10085395 96 + 27905053
UGGAUACCUUAGCCUCUGGUAGCGACAGUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGUCCAAUGUGAGGAGCUAUUUGUUAAAAAUUAUUUCU
(((((((((..(((((((.......))).)))).(((((.......)))))....))))))))).....(((((..((((.....))))..))))) ( -30.30)
>DroPse_CAF1 145403 90 + 1
AGGAUACCGAAGCCUCUGAUAUCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGUGGGGCUG------AAACAGGGUCCAU
.((((.((...(((((((.......))).)))).((((((....(((((.......)))))(((.....))))))))------)....)))))).. ( -32.40)
>DroSec_CAF1 144152 96 + 1
UGGAUACCUUAGCCUCUGGUAGCGACAAUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGCCCAAUGUGAGGAGCUAUUCGUUAAAGAGGAUUCCU
.(((..((((.....(..(((((.(((.((((((((.(((..........)))...)))))))).))).....)))))..).....))))..))). ( -30.60)
>DroEre_CAF1 156420 96 + 1
CGGAUACCUUAGUCUCUGGUAGCGACAGUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGACCAAUAUGAGGAGCUAUCCGAUAAAAGCGAUUCCU
((((((((((((((((((...((..((((((.(((.....))).)))))).)).)))).))).....)))))...))))))............... ( -27.30)
>DroAna_CAF1 157975 91 + 1
CGGAUACUUUAGUCUCUGGUACCGGCAGUGGGCAUCGGCAAUCACCGCCGAGUACAAGUGGCCAAUGUGGGGAGCUAAACC-----AAUUAAUUUA
.((....(((((.((((.((((((((.(((.((....))...))).)))).))))......((.....)))))))))))))-----.......... ( -27.10)
>DroPer_CAF1 146965 90 + 1
AGGAUACCGAAGCCUCUGAUAUCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGUGGGGCUG------AAACAGGGUCCAU
.((((.((...(((((((.......))).)))).((((((....(((((.......)))))(((.....))))))))------)....)))))).. ( -32.40)
>consensus
AGGAUACCUUAGCCUCUGGUAGCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGAGGAGCUAU_CG__AAAAAGGAUUCCU
.((.((((...(((((((.......))).)))).(((((.......))))).....)))).))................................. (-21.18 = -20.60 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:01 2006