| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,047,278 – 10,047,391 |
| Length | 113 |
| Max. P | 0.724148 |
| Location | 10,047,278 – 10,047,391 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.84 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -12.85 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10047278 113 - 27905053 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUGUAAUUGGCUAUAAAAGGCCUGCAGUACG----AUAUAUAGACUCUUAGAGGCCUGGUAUAAAGAUGAAGUGCAGCGGCUUUCUAAU ((-((((.(((((((--(.((((.....(((((...))))).((((..((((((..(((.(.----.......)))).....))))))..))))....)))))))))))))))))).... ( -37.00) >DroSec_CAF1 115721 101 - 1 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUG-AAUUGGCUAUAAAAGGCC---AGU-----------AAAGAC-CUUAGGGGGCUGGUAAAAAGAUGAAGUGCACCGGCUUUCUAAU ((-((((((((....--(((((...((((.....-.(((((((......))))---)))-----------..((.(-((....)))))))))...)))))....))))..)))))).... ( -30.60) >DroSim_CAF1 117108 108 - 1 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUG-AAUUGGCUAUAAAAGGCC---AGUACG----AUAUAAAGAC-CUUAGGGGGCUGGUAAAAAGAUGAAGUGCACUGGCUUUCUAAU ((-((((((((....--(((((...((((...((-.(((((((......))))---))).))----......((.(-((....)))))))))...)))))....))))..)))))).... ( -31.00) >DroEre_CAF1 120672 108 - 1 GC-AAGCGUGCUGCA--CACUUAAGUACAGAAUA-AAUUGGCUAUAAAAGGGC---AGUACG----AUGUAAAGACUCUUAGG-GACUGGUAAAAUGAUGAAGUGCACCGGCUUUCUAAG ((-(..((((((((.--..(((.(((.(((....-..))))))....))).))---))))))----.))).......(((((.-.((((((...((......))..))))).)..))))) ( -26.90) >DroYak_CAF1 121914 113 - 1 GC-AAGCGUGCUGCA--CAUUUAAGUGCCGAAUG-AAUUGGCUAUAAAAGGCC---AGUACGAUCGAUAUAAAGUCUCUUAGGAGGCUGGUAUAAAGAUGAAGUGCACCGGCUUUCUAAU (.-((((((((....--(((((..(((((((.((-.(((((((......))))---))).)).)).......((((((....)))))))))))..)))))....))))..)))).).... ( -35.70) >DroPer_CAF1 118985 105 - 1 AGAAAGAGUGAUGUAUGCCUUGAGGUAAUCGAU--------CUAUAUAAGAAC---UGGGCA----AUACUAAACCUCUGGUCAGACUGUUGGAGCGAUGAAGUGGAGCAGUUCGUUGCU .((.((((....(((((((((((.....))))(--------((.....)))..---..))).----)))).....))))..))..........(((((((((.((...)).))))))))) ( -24.80) >consensus GG_AAGCGUGCUGCA__CAUUUAAGUACCCAAUG_AAUUGGCUAUAAAAGGCC___AGUACG____AUAUAAAGACUCUUAGGGGGCUGGUAAAAAGAUGAAGUGCACCGGCUUUCUAAU .......(((((...........)))))...........((((......)))).........................(((((((((((((...............))))))))))))). (-12.85 = -13.63 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:50 2006