| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,044,385 – 10,044,489 |
| Length | 104 |
| Max. P | 0.603469 |
| Location | 10,044,385 – 10,044,489 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -9.38 |
| Energy contribution | -10.72 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10044385 104 - 27905053 A-AAAACUACUGCUUA----------UACUAUAAUAAGGUACACGGACUACAUAGUACCUAUUUGCCUUUGGAGCACCAGCAACCGCAUGGAUUUGCCCCAGGGGCUCAAGAGCU .-.........((((.----------..........((((((............))))))....((((((((.((((((((....)).)))...))).))))))))....)))). ( -31.30) >DroSec_CAF1 112868 99 - 1 C-AAAACUACUGCUUA---------------UGAUAAGGUAUACGGACUACAUAGUACCUAUUUGCCUCUGGAGCGCCAGCAAUCGCAUGGAAUUGGCCCAGGGGCUCAAGAGCU .-.........((((.---------------(((..((((((...(....)...))))))....((((((((.((.(((((....)).))).....))))))))))))).)))). ( -33.10) >DroSim_CAF1 114191 99 - 1 C-AAAACUACUGCUUA---------------UGAUAAGGUAUACGGACUACAUAGUACCUAUUUGCCUCUGGAGCACCAGCAACCGCAUGGAAUUGGCCCAGGGGCUCAAGAGCU .-.........((((.---------------(((..((((((...(....)...))))))....((((((((.((.(((((....)).))).....))))))))))))).)))). ( -33.10) >DroWil_CAF1 121864 100 - 1 A-ACCAUAAGUGUUUA--------------AUAUCUAGAUUCACCAACUACAUAGUUCCAAUUUGCCUGUGGAACACAAAUUAUCGUCUGGAAUUGCCACAGGGACAGAAAUCCU .-.......(((..((--------------((.(((((((..............((((((.........))))))..........))))))))))).))).((((......)))) ( -15.65) >DroYak_CAF1 118874 114 - 1 C-ACAACUACUGCCUAUUUAUACUUAUAUUUUAACAAGGUACACGGACUACAUAGUGCCUAUUUGCCUGUGGAGCACCAGCAACCGCAUGGACUUGCCCCAGGGUCACAAGAGCU .-.........((((.....................((((((............)))))).....((((.((.((((((((....)).)))...)))))))))......)).)). ( -24.60) >DroPer_CAF1 116043 99 - 1 CUAACUCCACUCCUUC---------------UUG-CAGCUUCAGCGACUACAUCGUACCCAUUUGUCUUUGGAGCACGAGCAACCGCAUGGAUCUGCCGGAGGGAGUCAGGUCAU ...(((..((((((((---------------(.(-(((.(((((((......((((.((((........))).).)))).....))).)))).)))).)))))))))..)))... ( -37.10) >consensus C_AAAACUACUGCUUA_______________UAAUAAGGUACACGGACUACAUAGUACCUAUUUGCCUCUGGAGCACCAGCAACCGCAUGGAAUUGCCCCAGGGGCUCAAGAGCU .....................................(((((............))))).....((((((((..(((((((....)).)))...))..))))))))......... ( -9.38 = -10.72 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:48 2006