Locus 3700

Sequence ID 3R_DroMel_CAF1
Location 10,042,564 – 10,042,662
Length 98
Max. P 0.926605
window5933

overview

Window 3

Location 10,042,564 – 10,042,662
Length 98
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 95.95
Mean single sequence MFE -21.80
Consensus MFE -20.62
Energy contribution -20.40
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.95
SVM decision value 1.18
SVM RNA-class probability 0.926605
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10042564 98 - 27905053
GAAAAGUUGCGUGCGAGGCUGUGCCUUGUAAGUAAA-AAGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA
......(((((((((((((...))))).........-..............................(((((....)))))......)))))))).... ( -20.90)
>DroSec_CAF1 111053 98 - 1
GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAA-AUGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA
......((((((((..(((...)))..(((..((((-((........))))))..............(((((....))))).)))..)))))))).... ( -23.10)
>DroSim_CAF1 112364 99 - 1
GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAAAAAGAAAACCAAUUUUUAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA
......((((((((..(((...)))..........................................(((((....)))))......)))))))).... ( -21.40)
>consensus
GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAA_AAGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA
......((((((((..(((...)))..........................................(((((....)))))......)))))))).... (-20.62 = -20.40 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:47 2006