| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,422,082 – 1,422,185 |
| Length | 103 |
| Max. P | 0.783973 |
| Location | 1,422,082 – 1,422,185 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.92 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -18.33 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.783973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422082 103 - 27905053 ---CAGUUUUAAAGGGUUCAUGUACAGUAUGCAAAAGCGAAAGAAUGAUUGGGUGCCCAUAUAACCCAAUGCCGUGGUUAAUU-UGGCCAAUAAUCGUUUGGACAGC-- ---............((((.((((.....)))).((((((.......(((((((.........)))))))....(((((....-.)))))....))))))))))...-- ( -22.10) >DroVir_CAF1 3817 103 - 1 ---AAGUCUUAAAAAGCUCAUGUAAAAUAUGCAAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACUAAA---CAUAGUUACAUUUGGCCAAUAAUCGUUCGGACAAUCA ---..((((......((((.((((.....)))).))))....(((((((((..((.(((..((((((..---..))))))....))).)).)))))))))))))..... ( -30.30) >DroPse_CAF1 4639 104 - 1 GCACAAUUCCAAGAGGUUAAUUUCGGUCAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACU---UUUCAUAGUUACAUUUGGCCAAUAAUCAUUUGGACAGA-- .......((((((.(((((.....((((.(((....)))...(((((..(((....)))..(((((---......))))))))))))))..))))).))))))....-- ( -21.40) >DroEre_CAF1 4176 104 - 1 ---CAGUUUUAAAGGGUUCAUGUACAGUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCACUGCCGUGGUUAAUUUUGGCCAAUAAUCAUUUGGACAGC-- ---............((((..........(((....)))...(((((((((..((.(((..(((((.((....)))))))....))).)).)))))))))))))...-- ( -22.10) >DroYak_CAF1 4570 104 - 1 ---CAGUUUUAAAGGGUUUAUGUACAGUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCAUUCUCGUGGUUAAUUGUGGCCAAUAAUCGUUUGGACAGC-- ---..(((((....(((.(((.....))).))))))))....(((((((((..((.(((((((((((......).)))))..))))).)).))))))))).......-- ( -22.80) >DroMoj_CAF1 5485 103 - 1 ---AAAUCGCGAAAAGCCCAUGUAUAAUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCACAUAACUAAA---CAUAGUUAAAGUCGGCCAAUAAUCGUUCGGACAAACA ---.....((.....))((..........(((....)))...(((((((((..((.((((.((((((..---..))))))..)).)).)).)))))))))))....... ( -21.00) >consensus ___CAGUUUUAAAAGGUUCAUGUACAGUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCAAU__CAUAGUUAAAUUUGGCCAAUAAUCGUUUGGACAGC__ ...............((((..........(((....)))...(((((((((..((.(((..(((((.........)))))....))).)).)))))))))))))..... (-18.33 = -17.67 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006