Locus 37

Sequence ID 3R_DroMel_CAF1
Location 293,061 – 293,163
Length 102
Max. P 0.995622
window60 window61

overview

Window 0

Location 293,061 – 293,163
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 72.11
Mean single sequence MFE -45.68
Consensus MFE -20.08
Energy contribution -19.87
Covariance contribution -0.22
Combinations/Pair 1.40
Mean z-score -2.72
Structure conservation index 0.44
SVM decision value 2.60
SVM RNA-class probability 0.995622
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 293061 102 + 27905053
UCUCCAAGAUGCUUGCUGUGCCCAUUCGAAGCCGA------GCCGUUGGCA---UAGCCAUUGGCCUUGACCGCCUGCCGGCGACGUCGAGCUGCGUUGAGAUAUUUCGCU
((((...(((((..((((((((..((((....)))------).....))))---))))....(((.(((((((((....))))..)))))))))))))))))......... ( -35.40)
>DroVir_CAF1 57407 105 + 1
CUGCCCAAAUGCUUGACUUUGCCGUUCGUGUGAAC------GCCGUUGGAUUGGUGGCCAUUGGCCUUGAUGGCCUCACGGCGACGACGUUGCGCAUUUAGGUAUUUGGCU
..(((.((((((((((...(((....((((((..(------((((......)))))..))..((((.....)))).))))(((((...)))))))).))))))))))))). ( -39.80)
>DroPse_CAF1 32399 108 + 1
UUGCCCAAGUGCUUGCUGUGCCCGUUUGUGUGCAGGCCAUGGCCAUUGGCA---UGACCGUUGGCCUUGACGGCCUGCCGGCGACGACGGGUCACAGUCAGGUAUUUGGCU
..(((.(((((((((((((((((((((((..(((((((..(((((.(((..---...))).))))).....)))))))..)))..)))))).))))).)))))))))))). ( -60.90)
>DroMoj_CAF1 42578 102 + 1
UUGCCUAAAUGCUUGACUUUGCCAUUCGUGUAGAC------GCCAUUGGCA---UGGCCAUUGACUUCGACUGCCUCGCGGCGGCGACGCUUUGCAUUCAGAUAUUUAGCC
....(((((((.((((...(((((...(((....)------))...)))))---.(((..(((....)))..)))..((((((....))))..))..)))).))))))).. ( -29.60)
>DroAna_CAF1 29119 102 + 1
UCCCCCAGGUGCUUGGAGUGCCCGUUGGAUUGCAC------ACCGUUGGCA---UGUCCGUUGGCCUUGACAGCCUGGCGACGACGCCGGGUGGCACUCAGGUAUUUGGCU
....(((((((((((.((((((((.((((((((.(------(....)))))---.))))).)).........((((((((....))))))))))))))))))))))))).. ( -47.50)
>DroPer_CAF1 32838 108 + 1
UUGCCCAAGUGCUUGCUGUGCCCGUUUGUGUGCAGGCCAUGGCCAUUGGCA---UGACCGUUGGCCUUGACGGCCUGCCGGCGACGACGGGUCACAGUCAGGUAUUUGGCU
..(((.(((((((((((((((((((((((..(((((((..(((((.(((..---...))).))))).....)))))))..)))..)))))).))))).)))))))))))). ( -60.90)
>consensus
UUGCCCAAAUGCUUGCUGUGCCCGUUCGUGUGCAC______GCCAUUGGCA___UGGCCAUUGGCCUUGACGGCCUGCCGGCGACGACGGGUCGCAUUCAGGUAUUUGGCU
....((((((((((((.((((.((((...............((((.(((........))).)))).......(((....)))...)))).)).)).).))))))))))).. (-20.08 = -19.87 +  -0.22)

alignment

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secondary structure

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dotplot

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Window 1

Location 293,061 – 293,163
Length 102
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 72.11
Mean single sequence MFE -40.58
Consensus MFE -18.80
Energy contribution -18.92
Covariance contribution 0.12
Combinations/Pair 1.55
Mean z-score -2.64
Structure conservation index 0.46
SVM decision value 2.54
SVM RNA-class probability 0.995042
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 293061 102 - 27905053
AGCGAAAUAUCUCAACGCAGCUCGACGUCGCCGGCAGGCGGUCAAGGCCAAUGGCUA---UGCCAACGGC------UCGGCUUCGAAUGGGCACAGCAAGCAUCUUGGAGA
.........((((......(((((.((..((((((.(..((.((.((((...)))).---))))..).))------.))))..))..)))))....((((...)))))))) ( -31.70)
>DroVir_CAF1 57407 105 - 1
AGCCAAAUACCUAAAUGCGCAACGUCGUCGCCGUGAGGCCAUCAAGGCCAAUGGCCACCAAUCCAACGGC------GUUCACACGAACGGCAAAGUCAAGCAUUUGGGCAG
.........(((((((((...((...((((((((..((((.....))))..(((........))))))))------((((....)))))))...))...)))))))))... ( -38.10)
>DroPse_CAF1 32399 108 - 1
AGCCAAAUACCUGACUGUGACCCGUCGUCGCCGGCAGGCCGUCAAGGCCAACGGUCA---UGCCAAUGGCCAUGGCCUGCACACAAACGGGCACAGCAAGCACUUGGGCAA
.(((......((..(((((.(((((........(((((((((...(((((..((...---..))..))))))))))))))......))))))))))..))......))).. ( -50.44)
>DroMoj_CAF1 42578 102 - 1
GGCUAAAUAUCUGAAUGCAAAGCGUCGCCGCCGCGAGGCAGUCGAAGUCAAUGGCCA---UGCCAAUGGC------GUCUACACGAAUGGCAAAGUCAAGCAUUUAGGCAA
.........(((((((((...((...((((((....))).((.((.((((.((((..---.)))).))))------.)).))......)))...))...)))))))))... ( -36.00)
>DroAna_CAF1 29119 102 - 1
AGCCAAAUACCUGAGUGCCACCCGGCGUCGUCGCCAGGCUGUCAAGGCCAACGGACA---UGCCAACGGU------GUGCAAUCCAACGGGCACUCCAAGCACCUGGGGGA
.(((........((.(((((((.((((....)))).(((((((..(.....).))))---.)))...)))------).))).)).....))).(((((......))))).. ( -36.82)
>DroPer_CAF1 32838 108 - 1
AGCCAAAUACCUGACUGUGACCCGUCGUCGCCGGCAGGCCGUCAAGGCCAACGGUCA---UGCCAAUGGCCAUGGCCUGCACACAAACGGGCACAGCAAGCACUUGGGCAA
.(((......((..(((((.(((((........(((((((((...(((((..((...---..))..))))))))))))))......))))))))))..))......))).. ( -50.44)
>consensus
AGCCAAAUACCUGAAUGCGACCCGUCGUCGCCGGCAGGCCGUCAAGGCCAACGGCCA___UGCCAACGGC______GUGCACACGAACGGGCACAGCAAGCACUUGGGCAA
.........(((((((((...........((((...((((.....))))..))))......(((...))).............................)))))))))... (-18.80 = -18.92 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:00 2006