Locus 3698

Sequence ID 3R_DroMel_CAF1
Location 10,040,197 – 10,040,293
Length 96
Max. P 0.999547
window5931

overview

Window 1

Location 10,040,197 – 10,040,293
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 95.73
Mean single sequence MFE -30.64
Consensus MFE -28.50
Energy contribution -28.62
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -2.30
Structure conservation index 0.93
SVM decision value 3.71
SVM RNA-class probability 0.999547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10040197 96 + 27905053
UGAGAAACUCGCUGGGUUUCAGAUUCAGGCAUCGCGGAGAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
.(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -31.10)
>DroSec_CAF1 108505 96 + 1
UGAGGAACUCGCUGGAUUUCAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
.(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -31.60)
>DroSim_CAF1 109944 96 + 1
UGAGGAACUCGCUGGAUUUUAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
.(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -29.00)
>DroEre_CAF1 113548 96 + 1
UAAGGAGCUCGCUGGAUUUGGGAUUCAGGCAACGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
......(((.(((((((....(((((.((...((((.....))))..)).)))))..)))))))......((....))......)))......... ( -27.20)
>DroYak_CAF1 114564 96 + 1
UGAGGAGCUCGCUGGAUUUCAGAUUCGGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
.(((...)))((((((((((.((((((((..(((((.....)))))))).))))).......(((........))))))))).))))......... ( -34.30)
>consensus
UGAGGAACUCGCUGGAUUUCAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC
..........((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... (-28.50 = -28.62 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:44 2006