Locus 3697

Sequence ID 3R_DroMel_CAF1
Location 10,035,816 – 10,035,912
Length 96
Max. P 0.985825
window5930

overview

Window 0

Location 10,035,816 – 10,035,912
Length 96
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.13
Mean single sequence MFE -34.48
Consensus MFE -21.29
Energy contribution -21.07
Covariance contribution -0.22
Combinations/Pair 1.25
Mean z-score -4.29
Structure conservation index 0.62
SVM decision value 2.02
SVM RNA-class probability 0.985825
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10035816 96 + 27905053
----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAAACAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU-------
----......(((.(((....(((((((((((----------((..(.........)..)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -33.70)
>DroSec_CAF1 104185 96 + 1
----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GUACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU-------
----......(((.(((....(((((((((((----------(..((.........))..))))))-)))))).(((.(((((........))))))))))).))).....------- ( -33.80)
>DroSim_CAF1 104823 96 + 1
----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUACCACACACUUGCACAGUGGUCUCAAU-------
----......(((.(((....(((((((((((----------((.((.........)).)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -36.00)
>DroEre_CAF1 109153 96 + 1
----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCGCACGGAUUUCUCU-UGGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU-------
----......(((.(((....((((..(((((----------((.((.........)).)))))))-..)))).(((.(((((........))))))))))).))).....------- ( -35.10)
>DroYak_CAF1 109312 96 + 1
----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU-------
----......(((.(((....(((((((((((----------((.((.........)).)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -36.00)
>DroPer_CAF1 107320 116 + 1
GAGCGAGAAUGGGAAUGCCAAUGGAUAAAAGAAUGAUAGGGGAAACUCUAUCAUAUGGAUUUUUGUCUAGCC--GUGUCAAUAUGCUCAACAAUUGCUCAACCUCCGCAAUCCAUGAA
((((((...((((..((.((.((((((((((.(((((((((....))))))))).....))))))))))...--.)).)).....))))....))))))................... ( -32.30)
>consensus
____AAAAAUGGCGACUAGAAUGGCUGAGAGA__________GAACCAUAUCUCACGGAUUUCUCU_UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU_______
..........(((.(((....(((((((((((.................(((.....))).))))).)))))).(((.(((((........))))))))))).)))............ (-21.29 = -21.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:43 2006