| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,032,710 – 10,032,820 |
| Length | 110 |
| Max. P | 0.701408 |
| Location | 10,032,710 – 10,032,820 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.83 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -15.93 |
| Energy contribution | -16.93 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10032710 110 - 27905053 U-UCCCCAACUGUUUAAAUU-UCUUUUAGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGAUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUUAU .-...((((.((((((((..-...)))))...))).)))).....(((..(((((((((((((((..((.....))..))))))))))..)))))...)))........... ( -25.70) >DroSec_CAF1 101231 110 - 1 U-UCCCCAACUGUUUAAAUU-UCUUUUUGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU .-.......((((.......-....((((((.......)))))).(((..(((((((((((((((..((.....))..))))))))))..)))))...)))..))))..... ( -27.60) >DroSim_CAF1 101423 111 - 1 U-UCCCCAACUGUUUAAAUUUUCUUUUAGCCCACACUUGGCAAGUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU .-...((((.((((((((......)))))...))).)))).(((.((((((((((((((((((((..((.....))..)))))))))))........))))..))))).))) ( -27.50) >DroEre_CAF1 106042 105 - 1 CGCCCCCAACUGUUAAAAUA-UGUUUUAGCCCACACUUGGCAGAUGCUUUGUUUA-GCUUUCAUCCUGCCCACU-----GUGGAAGCUUCUAAAUUUAAGCAUAUAGCUCUU .((........(((((((..-..)))))))(((((...(((((..(((......)-)).......)))))...)-----))))..((((........)))).....)).... ( -22.50) >DroYak_CAF1 106052 100 - 1 C-UCCCCAGCUGUUAAAAUA-UCUUUUAGCCAACAGUUGGCAGAUGCUUUGUUUA-GCUUUUACUUUGCCCG-------GUGAAAGCAUCUAAAUUUAAGCAUAUA--UCUU .-...(((((((((....((-.....))...)))))))))...((((((.(((((-(((((((((......)-------))))))))...)))))..))))))...--.... ( -27.20) >DroAna_CAF1 114584 110 - 1 U-UCUCCGCCAGUUUAAAUA-UCUUUUAGCACACACUUGGCAGAUGCUUUGUUUAUGCUUUCUCUUUGCGCGCUGUUCCGUGAAAGCAUCUAAAUUCCCGCUUACAGUUCUC .-.....(((((((((((..-...))))).....)).))))(((((((((......((.........)).(((......))))))))))))..................... ( -18.90) >consensus U_UCCCCAACUGUUUAAAUA_UCUUUUAGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU ............................(((.......)))....(((..((((((((((((((...((.....))...)))))))))..)))))...)))........... (-15.93 = -16.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:42 2006