Locus 3695

Sequence ID 3R_DroMel_CAF1
Location 10,029,681 – 10,029,776
Length 95
Max. P 0.638726
window5928

overview

Window 8

Location 10,029,681 – 10,029,776
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.99
Mean single sequence MFE -31.18
Consensus MFE -20.41
Energy contribution -20.63
Covariance contribution 0.22
Combinations/Pair 1.10
Mean z-score -1.48
Structure conservation index 0.65
SVM decision value 0.22
SVM RNA-class probability 0.638726
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10029681 95 - 27905053
AUCCGCGCACCACUCG-------AGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA
....((((.......(-------...--.)...((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))).)). ( -24.90)
>DroPse_CAF1 99505 95 - 1
-------CUCCACUCGUGUUGGGGGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA
-------((((((....).)))))((--....(((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))..)). ( -28.90)
>DroEre_CAF1 103114 95 - 1
AGCCACGCACCACUCG-------AGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA
(((...((........-------.))--.....((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))))... ( -24.00)
>DroMoj_CAF1 123609 96 - 1
-GCUGGCUGGCAGAGG-------AGC--CCGCUUGACAUGCCUGGCAGCGCUUAAAGCGGGCUCCUCGUAUGGCUUGGUGCAAUGCCUUUUAAAGUGUCAGCUGCU
-((.((((((((((((-------(((--((((((....(((......)))....)))))))))))))((((.((.....)).)))).........)))))))))). ( -49.10)
>DroAna_CAF1 111569 96 - 1
ACCCCCUCGGCACUCG-------AGGUGCCAUCUGACAUAGCUGGGAGCGCUUAAAGCCGG-AUUUAAGAUGGCUUUGU-CAAUGCCUUUUA-AGUGUCAGCUGCA
........(((((...-------..)))))..(((((((...((((((.((.((((((((.-........)))))))).-....))))))))-.)))))))..... ( -30.40)
>DroPer_CAF1 100669 95 - 1
-------CUCCACUCGUGUUGGAGGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA
-------((((((....).)))))((--....(((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))..)). ( -29.80)
>consensus
__CC_C_CACCACUCG_______AGC__CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG_AUUUUAUGUGGCUUUGU_CAAUGCCUUUUAAAGUGUCAGCUGCA
.............................((.(((((((....((((.....((((((((..........)))))))).....)))).......))))))).)).. (-20.41 = -20.63 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006