Locus 3694

Sequence ID 3R_DroMel_CAF1
Location 10,016,944 – 10,017,038
Length 94
Max. P 0.747894
window5927

overview

Window 7

Location 10,016,944 – 10,017,038
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 76.54
Mean single sequence MFE -25.19
Consensus MFE -16.39
Energy contribution -15.87
Covariance contribution -0.52
Combinations/Pair 1.52
Mean z-score -1.39
Structure conservation index 0.65
SVM decision value 0.47
SVM RNA-class probability 0.747894
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10016944 94 - 27905053
AAUCAACGGAGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUGCAGAUUGUAGGGGUUAC
((((..((.(((((.((....(((((((((((((((.((......)))))))..)))))))-------)))..)).))))).))..))))........... ( -25.30)
>DroSec_CAF1 94668 94 - 1
GACCAACGAAGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUUGC
((((.(((((((((.((....(((((((((((((((.((......)))))))..)))))))-------)))..)).))))).......))))...)))).. ( -27.21)
>DroSim_CAF1 94832 94 - 1
GACCAACAACGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUCGC
((((.((((((((((.((...(((((((((((((((.((......)))))))..)))))))-------)))...))....))))).).))))...)))).. ( -28.30)
>DroEre_CAF1 99212 94 - 1
GGCCAACAAAGAGUCUCAAAAGAAGUGUCAUUACCAGCUGGUGAAAGUGGUGAAGUGGCAA-------UUUGGGUUGCUCUAUCCAGAUUGUGGCGGCUAC
((((.(((.....(((....)))..)))..((((((.((......)))))))).((.((((-------(((((((......))))))))))).)))))).. ( -30.40)
>DroYak_CAF1 99001 94 - 1
GGCCAACAAAGAGUAUCAGAAGAAGUGUCAUUACCAGCUUGUGAGAGUGGUGAAGUGGCAA-------CUUGGGUUGUCUUACCCAGAUUGUGGGGGUUAC
((((..((......(((.....((((((((((((((.(((....))))))))..))))).)-------)))((((......)))).)))..))..)))).. ( -26.40)
>DroAna_CAF1 108162 97 - 1
GAGCAGGAAAAAGUUGGCAAAGAAGUGUCAUUACCAGCUGGUAAAAGUGGUACAAGUCCAUCAUUAAACUUAUGUUUUAUU--UAAGAUUUUAGAGACU--
.....(((......(((((......))))).(((((.((......)))))))....))).((.(((((((((.........--))))..))))).))..-- ( -13.50)
>consensus
GACCAACAAAGAGUAACAAAAGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU_______UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUUAC
((((.((((................((((((((((.(((......)))))))..)))))).........((((((......)))))).))))...)))).. (-16.39 = -15.87 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:39 2006