| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,006,250 – 10,006,341 |
| Length | 91 |
| Max. P | 0.808023 |
| Location | 10,006,250 – 10,006,341 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -18.70 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10006250 91 - 27905053 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >DroSec_CAF1 88625 91 - 1 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >DroSim_CAF1 88825 91 - 1 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >consensus GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. (-18.70 = -18.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:36 2006