| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,003,076 – 10,003,169 |
| Length | 93 |
| Max. P | 0.810993 |
| Location | 10,003,076 – 10,003,169 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10003076 93 + 27905053 GAGUGAGAAAUGUGGCAAGUGACAUGUGUCACUCCAUAAUAAUCGCAUUUGCAUGGAGAC------------A-AACCGCCAUGAAUAUCCAAACAGAAACUUAAC ..((((....(((((..((((((....)))))))))))....)))).....(((((.(..------------.-...).)))))...................... ( -23.40) >DroPse_CAF1 87833 96 + 1 G---------UGUGGCAAGUGACAUGUGUCACUCCAUAAUAAUCGCAUUUGCAUGGAUCCCAAACGAUUGCAA-AACUGCCAUGAAUAACGAAACAGGAACUUGGA .---------.((((((((((((....))))))...........(((.(((..(((...)))..))).)))..-...))))))....................... ( -22.40) >DroEre_CAF1 90020 93 + 1 GAGUGAGAAAUGUGGCAAGUGACAUGUGUCACUUCAUAAUAAUCGCAUUUGCAUGGAGAC------------A-AACCGCCAUGAAUAUCCAAACGGAAACUUAAC ...((((....((((((((((((....)))))))..........((....)).((....)------------)-....))))).....(((....)))..)))).. ( -23.80) >DroYak_CAF1 89754 93 + 1 GAGUGAGAAAUGUGGCAAGUGACAUGUGUCACUCCAUAAUAAUCGCAUUUGCAUGGAGGC------------A-AACCGCCAUGAAUAUCCAAACAGAAACUUAAC ..((((....(((((..((((((....)))))))))))....)))).....(((((.((.------------.-..)).)))))...................... ( -26.10) >DroAna_CAF1 96248 94 + 1 GGGUGAGACGUGUGGCAAGUGACAUGUGUCACUCAAUAAUAAUCGCAUUUGCAUGGAUCC------------ACAACUGCCAUGAAUAGCCAAACAGAAACUUAAC ((((((.((((((.(....).)))))).))))))..........((.....(((((....------------.......)))))....))................ ( -24.00) >DroPer_CAF1 89046 96 + 1 G---------UGUGGCAAGUGACAUGUGUCACUCCAUAAUAAUCGCAUUUGCAUGGAUCCCAAACGAUUGCAA-AACUGCCAUGAAUAACCAAACAGGAACUUGGA .---------.((((((((((((....))))))...........(((.(((..(((...)))..))).)))..-...))))))......((((........)))). ( -25.20) >consensus GAGUGAGAAAUGUGGCAAGUGACAUGUGUCACUCCAUAAUAAUCGCAUUUGCAUGGAGCC____________A_AACCGCCAUGAAUAUCCAAACAGAAACUUAAC ...........(((((..(((((....)))))(((((.......((....))))))).....................)))))....................... (-16.65 = -16.68 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:34 2006