| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,421,916 – 1,422,006 |
| Length | 90 |
| Max. P | 0.790520 |
| Location | 1,421,916 – 1,422,006 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -16.19 |
| Energy contribution | -15.63 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1421916 90 - 27905053 GGGAGUUGUGCCAAAGCAUUUGAAUGGUUGGGUGUCCAGAUAACUUUCCAUAGUUAAAUUUGGCCAAUAAUCAUUUGGACAGCA-UAACCG ..(.(((((((.......((..((((((((..((.((((((((((......)))))..))))).)).))))))))..))..)))-))))). ( -24.90) >DroVir_CAF1 3631 89 - 1 --AACGUAUGCCAGAGCAAAGGAAUGAUUGGGUGUCCAUAUAACUAAACAUAGUUACAUUCGGCCAAUAAUCGUUCGGACAAAUUUAACUU --...((.(((....)))...(((((((((..((.((((.((((((....)))))).))..)).)).)))))))))..))........... ( -16.60) >DroSec_CAF1 3813 88 - 1 --GAGUUGUGCCAGAGCAUUUGAAUGGUUGGGUGUCCAGAUAACUUUCCAUAGUUAAACUUGGCCAAUAAUCAUUUGGACAGCA-UAACUA --.((((((((.......((..((((((((..((.((((.(((((......)))))...)))).)).))))))))..))..)))-))))). ( -24.80) >DroEre_CAF1 4012 88 - 1 --GGAUUGUGCUAGAGCAUUUGAAUGGUUGGGUGUCCAGAUAACUUUACAUAGUUAAAUUUGGCCAAUAAUCAUUUGGACAGCA-UAACUA --((.(((((((.(....((..((((((((..((.((((((((((......)))))..))))).)).))))))))..)))))))-))))). ( -24.10) >DroWil_CAF1 4093 86 - 1 --AAUUUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUGUAACUUUACAUAGUUAUGUUUGGCCAAUAAUCGUUUGGACAAAA--AAUU- --......(((....)))...(((((((((..((.(((.((((((......))))))...))).)).)))))))))........--....- ( -17.50) >DroMoj_CAF1 5314 89 - 1 --AGGGUAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACUUAACAUAGUUACAUUUGGCCAAUAAUCGUUCGGACAAAAAUGAAUA --..((....)).........(((((((((..((.(((..(((((......)))))....))).)).)))))))))............... ( -18.40) >consensus __AAGUUAUGCCAGAGCAAAUGAAUGAUUGGGUGUCCAGAUAACUUUACAUAGUUAAAUUUGGCCAAUAAUCAUUUGGACAAAA_UAACUA ........(((....)))...(((((((((..((.(((..(((((......)))))....))).)).)))))))))............... (-16.19 = -15.63 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:34 2006