| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,995,578 – 9,995,696 |
| Length | 118 |
| Max. P | 0.688197 |
| Location | 9,995,578 – 9,995,696 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.72 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -15.81 |
| Energy contribution | -18.06 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9995578 118 - 27905053 AAUUUGGCAAUAA-AGCAUUUGCACCAACGAUGUAAAACUGUUUGCAAACGGUUUGUUAAAUGGUAAACUGUGCAUGUUACCUAUGCAAACAUGUAUAUAUUAUUUAA-AACCUAUAAAU ......((((...-((..((((((.......)))))).))..))))....(((((..(((((((((...((((((((((.........))))))))))))))))))))-))))....... ( -24.60) >DroSec_CAF1 77902 118 - 1 GAUUGCAUACAAA-AGCGUUUGCACAAACGAUGUAAAACUGUUUGCUAACGGUUCGUUAAAAGGUAAACUGUGCAUGUUACCUAUUCAAACAUGUAUAUAUUAUUUAA-AACAUAUAAAU ....((.......-.))((((((...(((((......((((((....))))))))))).....))))))((((((((((.........))))))))))..........-........... ( -22.20) >DroSim_CAF1 78106 119 - 1 GAUUGCAUACAAAAAUCGUUUGCACAAACGAUGUAAAACUGUUUGCAAACGGUUCGUUAAAUGGUAAACUGGGCAUGUUACCUAUUCAAACAUGUAUAUAUUAUUUAA-AACAUAUAAAU ..(((((.(((...(((((((....))))))).......))).)))))...(((..((((((((((......(((((((.........)))))))...))))))))))-)))........ ( -23.70) >DroEre_CAF1 82673 106 - 1 CACUGCAUAUA-A-AGCGU-UGCGCAAACGAUGUAAAAUUGUU-----------UGUUAAAUGGUAAACUGUGCAUGUUACCUAUUCAAACAUGUAUAUAUUAUUUAACAACCUAUAAAA ...........-.-((.((-((.(((((((((.....))))))-----------)))(((((((((...((((((((((.........))))))))))))))))))).))))))...... ( -24.80) >DroYak_CAF1 82061 118 - 1 GAUUGCAUAUA-A-AGCGUUUGCACAAACGAUGUAAAAUUGUUUGCAAACGGUUUGUUAAAUGGUAAACUGUGCAUGUUACCUAUUCAAACAUGUAUAUAUUAUUUAACAACAUAUAAAA .......((((-.-..((((((((..((((((.....))))))))))))))..(((((((((((((...((((((((((.........)))))))))))))))))))))))..))))... ( -33.60) >consensus GAUUGCAUACAAA_AGCGUUUGCACAAACGAUGUAAAACUGUUUGCAAACGGUUUGUUAAAUGGUAAACUGUGCAUGUUACCUAUUCAAACAUGUAUAUAUUAUUUAA_AACAUAUAAAU ................((((((((..((((.(.....).)))))))))))).....((((((((((...((((((((((.........))))))))))))))))))))............ (-15.81 = -18.06 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:30 2006