Locus 3686

Sequence ID 3R_DroMel_CAF1
Location 9,994,888 – 9,994,990
Length 102
Max. P 0.962304
window5918

overview

Window 8

Location 9,994,888 – 9,994,990
Length 102
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 90.64
Mean single sequence MFE -36.48
Consensus MFE -29.87
Energy contribution -29.11
Covariance contribution -0.76
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.82
SVM decision value 1.54
SVM RNA-class probability 0.962304
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9994888 102 + 27905053
AUUGAGGAGGAGGCC-------AUCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCUAUUUUCCA-AGGAACCAGGAGCAAAGAGUUCC
...(((((.(((((.-------..(.(((((((((((.....)))).....))))))).)..))))).)))))(((((.(.((((.-........)))).).)))))... ( -34.70)
>DroSec_CAF1 77279 103 + 1
AUUGAGGAGGAGGCC-------AGCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC
..((((((.(((((.-------(((.(((((((((((.....)))).....))))))).)))))))).)))))).....((((.....))))...(((((.....))))) ( -38.60)
>DroSim_CAF1 77408 103 + 1
AUUGAGGAGGAGGCC-------AGCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC
..((((((.(((((.-------(((.(((((((((((.....)))).....))))))).)))))))).)))))).....((((.....))))...(((((.....))))) ( -38.60)
>DroEre_CAF1 82046 102 + 1
AUUGAGGAGGCGACC-------AACAACCAGAUGCGGACCUGCCGGCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCC-CGUGGAGCCAGGAGCAAAGAGUUCC
..((((((((((((.-------..(((.(((((((((.....)).))))))).)))...))))))...)))))).((((.....-.)))).....(((((.....))))) ( -34.00)
>DroYak_CAF1 81365 110 + 1
AUUGAGGAGGAGACCAACUACCAACAACCAGAUGCGGACCUGCCGGCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCCAAGGAACCAGGAGCAAAGAGUUCC
..((((((.(((((.(((..((((....(((((((((.....)).))))))).))))..)))))))).)))))).....((((.....))))...(((((.....))))) ( -36.50)
>consensus
AUUGAGGAGGAGGCC_______AACAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC
..((((((.(((((..........(((.(((((((((.....))).)))))).)))......))))).)))))).....((((.....))))...(((((.....))))) (-29.87 = -29.11 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:29 2006