| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,989,099 – 9,989,216 |
| Length | 117 |
| Max. P | 0.651680 |
| Location | 9,989,099 – 9,989,216 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9989099 117 - 27905053 UUGCCGACCACAAAUACUAUGUCCCUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCUCUGAAA-AAAUUAAGUGGUCUUAAUUACUAAGCACUA--CGUAAGGUAAUC (((((((((((........((((((((((((..((....))))))))...))))))..(((((.......)))))-.......))))))....((((.........--.))))))))).. ( -32.40) >DroSec_CAF1 71618 118 - 1 UUGCCGACCACAAAUACUAUGUCCUUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC--UGUACGGUAAUC (((((((((((.............(((((((..((....)))))))))..(((((.......)))))................))))))...........((....--.))..))))).. ( -30.40) >DroSim_CAF1 71640 118 - 1 UUGCCGACCACAAAUACUAUGUCCCUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC--UGUAAGGAAAUC ...((((((((........((((((((((((..((....))))))))...))))))..(((((.......)))))........))))))....((((.........--.))))))..... ( -29.80) >DroEre_CAF1 76387 118 - 1 UUGCCGACCACAAAAACUAUGUCCUUGGGACUAAGAUUCCUAUCCAAAUUGGGACAGGUUUCGCCCUCCCUGGAAAUAUGCAAGUGGUCGUAAUUACUUAGCACUG--UGCAAGGUAAUC ....(((((((......(((.(((..((((....((..(((.(((......))).)))..))....)))).))).))).....)))))))..(((((((.((....--.)).))))))). ( -38.40) >DroYak_CAF1 74572 118 - 1 UUGCCGACCACAAAAACUAUGUCCUUGGGGCUAAGAUUCCUGUCCAAAUUGGGGCAUGUUUCGCCCUCCCUGGAAAAAUGCAAGUGGUCUUAAUUACUUAGCAGUG--UUUAAGGUAAUC (((((((((((..........(((..(((((...((..(.(((((......))))).)..)))))))....))).........))))))((((.((((....))))--.))))))))).. ( -35.41) >DroAna_CAF1 81576 114 - 1 UUGGCAAUAACGAAUACUAUGUCAUUUGGGUUGAUGUUCCUAUUCAGAUUUGGGCACGUUUCUCCCUUCCUACAAAAACAUAAUUAGACUGAA------AACAUUCUACUUACUUUAAUU .(((((.............)))))...(((..(((((.((((........)))).)))))...)))..............(((.((((.((..------..)).)))).)))........ ( -17.82) >consensus UUGCCGACCACAAAUACUAUGUCCUUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC__UGUAAGGUAAUC (((((((((((........((((((((((((..........))))))...))))))..(((((.......)))))........))))))...........((.......))..))))).. (-18.67 = -19.53 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:27 2006