| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,982,161 – 9,982,281 |
| Length | 120 |
| Max. P | 0.639609 |
| Location | 9,982,161 – 9,982,281 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.02 |
| Mean single sequence MFE | -33.69 |
| Consensus MFE | -20.13 |
| Energy contribution | -19.27 |
| Covariance contribution | -0.85 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9982161 120 - 27905053 CAACUUAAAAAGCUCACCGAGGAGUAUUCUAAUAUCAUUGACUCUGUGACCAAGAAGGUCAAAGAAAUGGAACCGCAAUCGAGCUCGUUGGUUCCUACGGAGCCACCUUCCGAUGCGAAU ...........((((......)))).........(((((...(((.(((((.....))))).))))))))...((((.(((.(...(.(((((((...))))))).)..))))))))... ( -30.20) >DroSec_CAF1 64646 120 - 1 CAGCUUAAAAAGCUCACCGAGGAGUACUCUAAUAUCAUCGACUCUGUGGCCAAGAAGGUCAAAGAAAUGGAACCGCCCUCGAGCUCGAUGGUUCCUACAGAGCCACCUUCCGAUGCGAAU .((((.....))))....(((.....)))......(((((.((((((((((.....))))........(((((((...(((....)))))))))).))))))........)))))..... ( -31.50) >DroSim_CAF1 64589 120 - 1 CAGCUUAAAAAGCUCACCGAGGAGUACUCUAAUAUCAUCGACUCGGUGGCCAAGAAGGUCAAAGAAAUGGAACCGCCCUCGAGCUCGAUGGUUCCUACAGAGCCACCUUCCGAUGCGAAU ..((.......((.(((((((..(..............)..)))))))))...((((((.........(((((((...(((....)))))))))).........))))))....)).... ( -36.01) >DroEre_CAF1 69022 120 - 1 CAGCUCAAGAGGCUCACCGAGGAGUACUCUAAUAUCAUCGACUCGGUGGUCAAGAAGGUCAAGCAAAUGGAUCUGCCCUCGAGCUCAUUGGCUCCCACAGAGCCACCUUCCGAUGCGAAU ..((((....(((.(((((((..(..............)..))))))))))..((((((..(((....((......))....)))....(((((.....))))))))))).)).)).... ( -38.34) >DroYak_CAF1 67430 114 - 1 CAGCUAAAGAGGCUCACCGAGCAGUACUCCAAUAUCAUUGACUCGGUGACCAAGAAGAUCCAACGAAUGGAA------UCAAGCUCAUUGGCUCCCACGGAGCCACCGUCCGAUGCGAAU .((((.....((.((((((((((((...........)))).)))))))))).....((((((.....))).)------)).))))...(((((((...))))))).(((.....)))... ( -37.20) >DroAna_CAF1 73116 114 - 1 CAACUGAAAGAAAUCACUCGACAGUUCACCCACAUUGUCGAUUCGGUAUCCACGAAGGUUAAGCAAAAUGAUU---GCUGGAGUCCAGUUGUUCCUACAGAAGAACCGUUGGAAAAG--- ..((((((.(....)..((((((((........)))))))))))))).(((((....))..(((((.....))---)))))).(((((..((((........))))..)))))....--- ( -28.90) >consensus CAGCUUAAAAAGCUCACCGAGGAGUACUCUAAUAUCAUCGACUCGGUGGCCAAGAAGGUCAAACAAAUGGAACCGCCCUCGAGCUCAUUGGUUCCUACAGAGCCACCUUCCGAUGCGAAU ..........(((((((((((..(..............)..))))))((((.....))))....................)))))...((((((.....))))))............... (-20.13 = -19.27 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:24 2006