Locus 3681

Sequence ID 3R_DroMel_CAF1
Location 9,979,192 – 9,979,312
Length 120
Max. P 0.834191
window5912

overview

Window 2

Location 9,979,192 – 9,979,312
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -42.16
Consensus MFE -33.70
Energy contribution -33.66
Covariance contribution -0.04
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value 0.73
SVM RNA-class probability 0.834191
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9979192 120 - 27905053
AGGUGUACCUCAUCCUGUUGGCCCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCACUUACUGCUGAUAAACGGGUGCGUCUGAUGGUGGCAGAAAGCACCUGGAUAUUUGUGGUGGCCA
(((((.....)).)))..(((((.(((((((((((.....)))))))..))))......((..(.((((..(((((((.((((.......))))..)))))))..)))).)..))))))) ( -40.60)
>DroSec_CAF1 61612 120 - 1
AGGUGUACCUAAUCCUGUUGGCGCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCGCUUACUGCUGAUAACCGGGUGCGUCUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA
.(((.((((.......((.((((.(((((((((((.....)))))))..)))).)))).))....((((.(((((((((((((.......))))).)))))))).))))...))))))). ( -46.20)
>DroSim_CAF1 61579 120 - 1
AGGUGUACCUAAUCCUGUUGGCGCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCUCUUACUGCUGAUAACCGGGUGCGUUUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA
.(((.((((......(((..((.....((((((((.....)))))))).(((.......)))))..))).(((((((((((((.......))))).))))))))........))))))). ( -40.50)
>DroEre_CAF1 66102 120 - 1
AGGUGUACCUCAUCCUGUUGGCACAACUGAUCACCUCCCUGGUCGUCAUAGUUGCGCUUACUGUUGAUAGGCAGGUGCGCCUGAUGGUGGCAGACAGCACCUGGAUGUUCCUGGUGGCCA
((((((((((...(((((..(((((((((((.(((.....))).)))..))))).......)))..))))).)))))))))).....((((......((((.((.....)).)))))))) ( -46.51)
>DroYak_CAF1 64502 120 - 1
AAGUGUACCUAAUUCUGUUAGCACAACUGAUCACCUCCCUGGUCGUCAUAGUAACCCUUACGGUUGAUGAGCAGGUGCGUCUGAUAGUGGCAGACAGCACCUGGAUCUUUUGGAUGGCCA
..(((...(((((...))))))))................(((((((....(((((.....)))))..((.((((((((((((.......))))).)))))))..)).....))))))). ( -37.00)
>consensus
AGGUGUACCUAAUCCUGUUGGCACAACUGAUCACUUCCCUGGUGGUUAUAGUUUCGCUUACUGCUGAUAACCGGGUGCGUCUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA
.(((.((((......(((((((.....((((((((.....)))))))).(((.......))))))))))..((((((((((((.......))))).))))))).........))))))). (-33.70 = -33.66 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:20 2006