| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,970,959 – 9,971,053 |
| Length | 94 |
| Max. P | 0.529750 |
| Location | 9,970,959 – 9,971,053 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.75 |
| Mean single sequence MFE | -23.75 |
| Consensus MFE | -16.21 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9970959 94 + 27905053 AAUUUGCCGUUUGUUGUACGAAGUUUUGUGGCAAACUAAGCCACACAAAAAUCGCAAAUGCGGGAGUGCUGGCCAAAAUAC-CCAAAAACUUUUG ......((((...(((..(((..(((((((((.......)))))).)))..))))))..))))((((..(((.........-)))...))))... ( -21.60) >DroSec_CAF1 53408 94 + 1 AAUUUGCCGUUUGUUGCACGAAGUUUUGUGGCAAACUAAGCCACACAAAAAUCCCAAAUGCGGGAGUGCUGACCAAAAUAU-CCCAGAACUUUAG ..((((...((((..((((.......((((((.......))))))......((((......))))))))....))))....-..))))....... ( -22.30) >DroEre_CAF1 57811 92 + 1 AAGUUGCCGUUUGUUGCACGAAGUUUUGUGGCA-ACUAAGCCACACAAAUAUCUCAAGUGCGGG-GUACUGGCCAAAAUAC-CCCAGAACUUUUG ........((((...((((((.((((((((((.-.....)))))).)))).))....))))(((-(((.(......).)))-))).))))..... ( -27.50) >DroYak_CAF1 56107 87 + 1 AAUUUG-------CUGUACGAAGUUUUGUGGCAAACUAAGCCACACAAAUAUCGCAAGUGCGGG-GUGCUGGCCAAAAUUCCCCCAGAACUUUUG ......-------......(((((((((.((........(((((((.....((((....)))).-))).))))........)).))))))))).. ( -23.59) >consensus AAUUUGCCGUUUGUUGCACGAAGUUUUGUGGCAAACUAAGCCACACAAAAAUCGCAAAUGCGGG_GUGCUGGCCAAAAUAC_CCCAGAACUUUUG ...................(((((((((((((.......))))).................(((.(((.(......).))).))))))))))).. (-16.21 = -16.15 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:07 2006